UHGV-0105702

Genome information

Genome length 37,965 bps

CDS count 68

Completeness 84.38% (medium-quality)

geNomad score 0.9803

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105702
vOTU ID	vOTU-036728
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_251566
BioSample	SAMEA3708818
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.38% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9803
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.52
Jumbo phage	No

Genome content
Genome length	37,965 bps
GC content	42.18%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	93.16%
Average CDS length	524.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105702_1	PHROG	phrog_8680	NA	unknown function
UHGV-0105702_1	UniRef90	UniRef90_A0A412EKN2	NA	NA
UHGV-0105702_1	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0105702_1	Pfam	PF14386	NA	DUF4417
UHGV-0105702_1	Structural annotation	PF14386	NA	NA
UHGV-0105702_2	PHROG	phrog_3366	NA	unknown function
UHGV-0105702_2	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0105702_2	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0105702_3	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0105702_3	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0105702_3	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0105702_3	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0105702_3	Structural annotation	PF11114	NA	NA
UHGV-0105702_4	PHROG	phrog_3266	tail completion	connector
UHGV-0105702_4	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0105702_4	Structural annotation	PF12691	NA	NA
UHGV-0105702_5	PHROG	phrog_3099	NA	unknown function
UHGV-0105702_5	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0105702_5	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105702_6	PHROG	phrog_11299	NA	unknown function
UHGV-0105702_6	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0105702_6	Structural annotation	PF10666	NA	NA
UHGV-0105702_7	PHROG	phrog_706	NA	unknown function
UHGV-0105702_7	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0105702_7	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0105702_7	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0105702_7	Structural annotation	PF06854	NA	NA
UHGV-0105702_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0105702_8	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0105702_8	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0105702_8	COG	COG1511	NA	NA
UHGV-0105702_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0105702_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0105702_10	PHROG	phrog_6616	tail protein	tail
UHGV-0105702_10	UniRef90	UniRef90_UPI001D0E203F	tail fiber domain-containing protein	NA
UHGV-0105702_10	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0105702_10	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0105702_10	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0105702_12	KOfam	K07273	acm; lysozyme	NA
UHGV-0105702_12	PHROG	phrog_291	endolysin	lysis
UHGV-0105702_12	UniRef90	UniRef90_A0A317UBE2	PG_binding_1 domain-containing protein	NA
UHGV-0105702_12	eggNOG-mapper	476272.RUMHYD_02876	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0105702_12	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105702_12	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0105702_12	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0105702_12	Structural annotation	PF01183, TIGR02594, TIGR04303, COG3757, COG3942	NA	NA
UHGV-0105702_13	KOfam	K14059	int; integrase	NA
UHGV-0105702_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0105702_13	UniRef90	UniRef90_D4LPN8	Phage integrase family	NA
UHGV-0105702_13	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0105702_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105702_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105702_13	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0105702_14	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0105702_14	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0105702_14	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0105702_14	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0105702_14	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0105702_15	KOfam	K07705	lytT, lytR; two-component system, LytTR family, response regulator LytT	NA
UHGV-0105702_15	PHROG	phrog_8810	NA	unknown function
UHGV-0105702_15	UniRef90	UniRef90_UPI001D0E4226	LytTR family DNA-binding domain-containing protein	NA
UHGV-0105702_15	eggNOG-mapper	556261.HMPREF0240_03082	response regulator	NA
UHGV-0105702_15	Pfam	PF00072	Response regulator receiver domain	Response_reg
UHGV-0105702_15	Pfam	PF04397	LytTr DNA-binding domain	LytTR
UHGV-0105702_15	COG	COG3279	DNA-binding response regulator, LytR/AlgR family	NA
UHGV-0105702_15	Structural annotation	PF04397, PF00072, MF_00981, NF010684, COG3279	NA	NA
UHGV-0105702_17	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105702_17	UniRef90	UniRef90_A0A2N5NVN2	HTH cro/C1-type domain-containing protein	NA
UHGV-0105702_17	eggNOG-mapper	1235800.C819_02266	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105702_17	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0105702_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105702_17	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105702_23	PHROG	phrog_6058	NA	unknown function
UHGV-0105702_23	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0105702_24	AcrCatalog	cluster_17974	NA	NA
UHGV-0105702_28	Structural annotation	NF011879	NA	NA
UHGV-0105702_29	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0105702_30	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105702_30	UniRef90	UniRef90_A0A414X367	Single-stranded DNA-binding protein	NA
UHGV-0105702_30	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0105702_30	Pfam	PF04404	ERF superfamily	ERF
UHGV-0105702_30	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0105702_33	Structural annotation	NF011879	NA	NA
UHGV-0105702_34	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0105702_35	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105702_35	UniRef90	UniRef90_A0A1V5UPJ3	ERF superfamily protein	NA
UHGV-0105702_35	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0105702_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0105702_35	Structural annotation	PF04404, TIGR00607, COG1978	NA	NA
UHGV-0105702_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105702_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105702_36	UniRef90	UniRef90_A0A412ELG8	Single-stranded DNA-binding protein	NA
UHGV-0105702_36	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0105702_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105702_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105702_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105702_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105702_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0105702_37	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0105702_37	UniRef90	UniRef90_A0A395XB48	ERCC4 domain-containing protein	NA
UHGV-0105702_37	eggNOG-mapper	357809.Cphy_2986	NA	NA
UHGV-0105702_37	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0105702_37	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0105702_38	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0105702_38	PHROG	phrog_11992	NA	unknown function
UHGV-0105702_38	UniRef90	UniRef90_A0A395X7I4	DNA primase	NA
UHGV-0105702_38	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0105702_38	PADLOC	drt-UG29	DRT	DRT
UHGV-0105702_38	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0105702_38	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0105702_38	Structural annotation	PF01807, PF00401	NA	NA
UHGV-0105702_39	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0105702_39	UniRef90	UniRef90_A0A7U9JR13	DNA/RNA helicase, superfamily II	NA
UHGV-0105702_39	eggNOG-mapper	1298920.KI911353_gene4866	NA	NA
UHGV-0105702_39	Pfam	PF06048	NA	DUF927
UHGV-0105702_39	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0105702_39	COG	COG5519	NA	NA
UHGV-0105702_39	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0105702_40	Structural annotation	NF010187	NA	NA
UHGV-0105702_41	PHROG	phrog_3502	NA	unknown function
UHGV-0105702_41	UniRef90	UniRef90_A0A412EKY9	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0105702_41	eggNOG-mapper	525256.HMPREF0091_10731	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0105702_41	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0105702_41	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0105702_41	Structural annotation	PF01726, MF_00732, TIGR00738, COG0640	NA	NA
UHGV-0105702_42	Structural annotation	PF04936	NA	NA
UHGV-0105702_44	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0105702_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105702_44	UniRef90	UniRef90_UPI0006D549B2	helix-turn-helix domain-containing protein	NA
UHGV-0105702_44	eggNOG-mapper	663278.Ethha_0519	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0105702_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105702_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0105702_44	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0105702_45	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0105702_45	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0105702_45	UniRef90	UniRef90_A0A317UED7	Restriction alleviation protein, Lar family	NA
UHGV-0105702_45	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0105702_45	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0105702_45	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0105702_46	PHROG	phrog_4601	NA	unknown function
UHGV-0105702_48	Structural annotation	COG4446	NA	NA
UHGV-0105702_49	PHROG	phrog_4601	NA	unknown function
UHGV-0105702_49	Structural annotation	PF17888	NA	NA
UHGV-0105702_50	PHROG	phrog_924	NA	unknown function
UHGV-0105702_50	UniRef90	UniRef90_A0A317UCE7	NA	NA
UHGV-0105702_50	Pfam	PF04448	NA	DUF551
UHGV-0105702_51	eggNOG-mapper	665950.HMPREF1025_01402	NA	NA
UHGV-0105702_53	eggNOG-mapper	476272.RUMHYD_01751	NA	NA
UHGV-0105702_53	AcrCatalog	cluster_11670	NA	NA
UHGV-0105702_55	PHROG	phrog_20593	NA	unknown function
UHGV-0105702_58	eggNOG-mapper	1235799.C818_02666	NA	NA
UHGV-0105702_58	Structural annotation	PF11302	NA	NA
UHGV-0105702_59	Structural annotation	PF17630	NA	NA
UHGV-0105702_60	eggNOG-mapper	537007.BLAHAN_05460	NA	NA
UHGV-0105702_62	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0105702_62	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0105702_62	UniRef90	UniRef90_A0A0Q8YU11	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0105702_62	eggNOG-mapper	1423758.BN55_01455	DNA methylase	NA
UHGV-0105702_62	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0105702_62	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0105702_62	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0105702_62	COG	COG0863	DNA modification methylase	NA
UHGV-0105702_62	Structural annotation	PF01555, PF02195, NF010253, TIGR00180, COG0863, COG5119	NA	NA
UHGV-0105702_63	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105702_63	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0105702_63	UniRef90	UniRef90_A0A6L8SYJ6	PBSX family phage terminase large subunit	NA
UHGV-0105702_63	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0105702_63	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105702_63	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0105702_63	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105702_63	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105702_63	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105702_65	PHROG	phrog_533	portal protein	head and packaging
UHGV-0105702_65	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0105702_65	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0105702_65	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0105702_66	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0105702_66	UniRef90	UniRef90_A0A395X791	Phage capsid protein	NA
UHGV-0105702_66	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0105702_66	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0105702_66	COG	COG2369	NA	NA
UHGV-0105702_66	Structural annotation	PF06152	NA	NA
UHGV-0105702_67	PHROG	phrog_3754	NA	unknown function
UHGV-0105702_67	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0105702_68	UniRef90	UniRef90_A0A395X7A4	CTP synthase	NA
UHGV-0105702_68	eggNOG-mapper	476272.RUMHYD_01766	NA	NA