UHGV-0105710

Genome information

Genome length 27,634 bps

CDS count 46

Completeness 75.53% (medium-quality)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105710
vOTU ID	vOTU-036548
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_235584
BioSample	SAMEA3708494
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.04
Jumbo phage	No

Genome content
Genome length	27,634 bps
GC content	36.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	89.10%
Average CDS length	537.59 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105710_1	KOfam	K14059	int; integrase	NA
UHGV-0105710_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0105710_1	UniRef90	UniRef90_E2NR65	Site-specific recombinase, phage integrase family	NA
UHGV-0105710_1	eggNOG-mapper	1504823.CCMM01000008_gene1083	DNA integration	NA
UHGV-0105710_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0105710_1	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0105710_2	PHROG	phrog_13160	NA	unknown function
UHGV-0105710_2	UniRef90	UniRef90_UPI001C381EC6	Ig-like domain-containing protein	NA
UHGV-0105710_2	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0105710_2	COG	COG0584	Glycerophosphoryl diester phosphodiesterase	NA
UHGV-0105710_2	Structural annotation	PF13028	NA	NA
UHGV-0105710_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0105710_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0105710_3	UniRef90	UniRef90_A0A1Y4R5X5	HTH cro/C1-type domain-containing protein	NA
UHGV-0105710_3	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0105710_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0105710_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0105710_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0105710_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0105710_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0105710_4	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0105710_4	UniRef90	UniRef90_A0A413S067	XRE family transcriptional regulator	NA
UHGV-0105710_4	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105710_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105710_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105710_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105710_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0105710_5	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0105710_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0105710_5	UniRef90	UniRef90_UPI001C38B6C0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0105710_5	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-0105710_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0105710_5	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0105710_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0105710_5	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0105710_6	UniRef90	UniRef90_A0A1Y4QSK7	HTH_17 domain-containing protein	NA
UHGV-0105710_11	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105710_11	UniRef90	UniRef90_A0A6N9L4Y3	Recombinase	NA
UHGV-0105710_11	eggNOG-mapper	888055.HMPREF9015_01894	YqaJ viral recombinase family	NA
UHGV-0105710_11	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0105710_11	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0105710_11	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0105710_11	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0105710_12	PHROG	phrog_674	NA	unknown function
UHGV-0105710_12	UniRef90	UniRef90_UPI0006BF03D4	NA	NA
UHGV-0105710_12	eggNOG-mapper	1300150.EMQU_2518	NA	NA
UHGV-0105710_12	Pfam	PF07083	NA	DUF1351
UHGV-0105710_12	Structural annotation	PF07083	NA	NA
UHGV-0105710_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0105710_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105710_13	UniRef90	UniRef90_A0A6N9L4X4	Recombinase	NA
UHGV-0105710_13	eggNOG-mapper	1095750.HMPREF9970_1675	RecT family	NA
UHGV-0105710_13	Pfam	PF03837	RecT family	RecT
UHGV-0105710_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0105710_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0105710_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0105710_14	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105710_14	UniRef90	UniRef90_UPI001C395B09	winged helix-turn-helix transcriptional regulator	NA
UHGV-0105710_14	eggNOG-mapper	1147044.H9A0L9_9CAUD	calcium ion binding	NA
UHGV-0105710_14	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0105710_14	Structural annotation	PF09681, NF033788, COG0640	NA	NA
UHGV-0105710_16	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0105710_16	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0105710_16	UniRef90	UniRef90_UPI001D09885E	site-specific DNA-methyltransferase	NA
UHGV-0105710_16	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0105710_16	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0105710_16	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0105710_16	COG	COG0863	DNA modification methylase	NA
UHGV-0105710_16	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0105710_17	PHROG	phrog_22292	NA	unknown function
UHGV-0105710_17	eggNOG-mapper	1232446.BAIE02000002_gene811	NA	NA
UHGV-0105710_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0105710_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0105710_24	UniRef90	UniRef90_A0A6N9L4V1	Single-stranded DNA-binding protein	NA
UHGV-0105710_24	eggNOG-mapper	1211844.CBLM010000119_gene3417	COG COG0629 Single-stranded DNA-binding protein	NA
UHGV-0105710_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105710_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0105710_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105710_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0105710_24	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0105710_25	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105710_25	UniRef90	UniRef90_A0A6N9L4W3	NA	NA
UHGV-0105710_25	eggNOG-mapper	445974.CLORAM_02947	NA	NA
UHGV-0105710_25	Pfam	PF06356	NA	DUF1064
UHGV-0105710_25	Structural annotation	PF06356	NA	NA
UHGV-0105710_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105710_26	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0105710_26	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0105710_26	Structural annotation	PF08281, MF_00674, NF007227, COG1191	NA	NA
UHGV-0105710_27	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0105710_27	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0105710_27	UniRef90	UniRef90_R6DKE7	ParB domain-containing protein	NA
UHGV-0105710_27	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0105710_27	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0105710_27	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0105710_27	Pfam	PF14386	NA	DUF4417
UHGV-0105710_27	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0105710_27	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0105710_29	PHROG	phrog_9479	NA	unknown function
UHGV-0105710_29	Structural annotation	PF15529	NA	NA
UHGV-0105710_30	PHROG	phrog_2412	NA	unknown function
UHGV-0105710_30	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0105710_30	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0105710_30	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0105710_30	Structural annotation	PF18932	NA	NA
UHGV-0105710_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105710_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0105710_31	UniRef90	UniRef90_A0A6N9L4W9	PBSX family phage terminase large subunit	NA
UHGV-0105710_31	eggNOG-mapper	445974.CLORAM_02936	Phage terminase, large subunit, PBSX family	NA
UHGV-0105710_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0105710_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0105710_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105710_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105710_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105710_32	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105710_32	UniRef90	UniRef90_A0A6N9L3D6	Phage portal protein	NA
UHGV-0105710_32	eggNOG-mapper	445974.CLORAM_02935	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105710_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105710_32	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0105710_32	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0105710_33	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0105710_33	eggNOG-mapper	445974.CLORAM_02934	Phage Mu protein F like protein	NA
UHGV-0105710_33	COG	COG2369	NA	NA
UHGV-0105710_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0105710_34	UniRef90	UniRef90_UPI001D09DF74	minor capsid protein	NA
UHGV-0105710_34	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-0105710_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0105710_34	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0105710_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0105710_34	COG	COG2369	NA	NA
UHGV-0105710_36	PHROG	phrog_3675	NA	unknown function
UHGV-0105710_36	UniRef90	UniRef90_A0A0E4H649	YjcQ protein	NA
UHGV-0105710_36	eggNOG-mapper	1120978.KB894082_gene1061	YjcQ protein	NA
UHGV-0105710_36	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0105710_36	Structural annotation	PF09639, TIGR04176, COG1695	NA	NA
UHGV-0105710_37	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0105710_37	UniRef90	UniRef90_A0A6N9L4V5	NA	NA
UHGV-0105710_37	eggNOG-mapper	1211844.CBLM010000016_gene1492	NA	NA
UHGV-0105710_37	Pfam	PF14265	NA	DUF4355
UHGV-0105710_37	Structural annotation	PF14265	NA	NA
UHGV-0105710_38	PHROG	phrog_422	major head protein	head and packaging
UHGV-0105710_38	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0105710_38	eggNOG-mapper	1211844.CBLM010000016_gene1491	NA	NA
UHGV-0105710_38	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0105710_39	PHROG	phrog_2724	NA	unknown function
UHGV-0105710_39	UniRef90	UniRef90_A0A6N9L4P9	Rho_N domain-containing protein	NA
UHGV-0105710_39	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0105710_39	COG	COG0261	Ribosomal protein L21	NA
UHGV-0105710_39	Structural annotation	PF07498	NA	NA
UHGV-0105710_40	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0105710_40	UniRef90	UniRef90_UPI001C101B39	phage head-tail connector protein	NA
UHGV-0105710_40	eggNOG-mapper	1235800.C819_00483	Phage gp6-like head-tail connector protein	NA
UHGV-0105710_40	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0105710_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0105710_41	PHROG	phrog_2168	NA	unknown function
UHGV-0105710_41	eggNOG-mapper	1280689.AUJC01000003_gene969	NA	NA
UHGV-0105710_41	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0105710_42	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105710_42	UniRef90	UniRef90_A0A6N9L3B6	HK97 gp10 family phage protein	NA
UHGV-0105710_42	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-0105710_42	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0105710_42	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0105710_43	PHROG	phrog_78	tail terminator	connector
UHGV-0105710_43	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-0105710_43	Structural annotation	PF05657	NA	NA
UHGV-0105710_44	PHROG	phrog_158	major tail protein	tail
UHGV-0105710_44	UniRef90	UniRef90_A0A6N9L2K6	Phage tail protein	NA
UHGV-0105710_44	eggNOG-mapper	445974.CLORAM_02924	Phage tail tube protein, TTP	NA
UHGV-0105710_44	Pfam	PF16461	Lambda phage tail tube protein, TTP	Phage_TTP_12
UHGV-0105710_44	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0105710_45	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0105710_45	UniRef90	UniRef90_UPI0011C9B36A	NA	NA
UHGV-0105710_45	eggNOG-mapper	445974.CLORAM_02923	NA	NA
UHGV-0105710_45	Pfam	PF19591	NA	DUF6096
UHGV-0105710_45	Structural annotation	PF19591	NA	NA
UHGV-0105710_46	PHROG	phrog_35723	NA	unknown function
UHGV-0105710_46	UniRef90	UniRef90_UPI0018CB2B8F	tape measure protein	NA
UHGV-0105710_46	eggNOG-mapper	650150.ERH_0621	tape measure	NA
UHGV-0105710_46	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0105710_46	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0105710_46	COG	COG1196	Chromosome segregation ATPase Smc	NA