UHGV-0105885

Genome information

Genome length 38,058 bps

CDS count 63

Completeness 100.00% (complete)

geNomad score 0.9752

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105885
vOTU ID	vOTU-045527
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252454
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9752
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.75
Jumbo phage	No

Genome content
Genome length	38,058 bps
GC content	44.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	87.16%
Average CDS length	531.71 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105885_1	PHROG	phrog_937	hemolysin	other
UHGV-0105885_1	eggNOG-mapper	428125.CLOLEP_00170	NA	NA
UHGV-0105885_2	PHROG	phrog_297	holin	lysis
UHGV-0105885_2	UniRef90	UniRef90_A7VT88	Holin, phage phi LC3 family	NA
UHGV-0105885_2	eggNOG-mapper	428125.CLOLEP_00169	COG COG5546 Small integral membrane protein	NA
UHGV-0105885_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0105885_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0105885_2	COG	COG5546	NA	NA
UHGV-0105885_2	Structural annotation	COG5546	NA	NA
UHGV-0105885_3	PHROG	phrog_5978	NA	unknown function
UHGV-0105885_3	UniRef90	UniRef90_UPI00189A8734	Fic family protein	NA
UHGV-0105885_3	eggNOG-mapper	518637.EUBIFOR_02334	Fic/DOC family	NA
UHGV-0105885_3	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0105885_3	COG	COG3177	Fic family protein	NA
UHGV-0105885_3	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-0105885_5	KOfam	K14059	int; integrase	NA
UHGV-0105885_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0105885_5	UniRef90	UniRef90_A0A3D0M0M9	Site-specific integrase	NA
UHGV-0105885_5	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0105885_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105885_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0105885_5	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0105885_8	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105885_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105885_8	UniRef90	UniRef90_A0A1Y4RHB8	HTH cro/C1-type domain-containing protein (Fragment)	NA
UHGV-0105885_8	eggNOG-mapper	645991.Sgly_0310	PFAM Peptidase S24 S26A S26B, conserved region	NA
UHGV-0105885_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105885_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0105885_9	UniRef90	UniRef90_R6PDN4	Conserved domain protein	NA
UHGV-0105885_9	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-0105885_9	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0105885_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105885_11	UniRef90	UniRef90_A0A1H0WAW2	Helix-turn-helix domain-containing protein	NA
UHGV-0105885_11	eggNOG-mapper	1235793.C809_01899	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105885_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105885_11	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0105885_11	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0105885_16	UniRef90	UniRef90_UPI00069FD66F	ParB N-terminal domain-containing protein	NA
UHGV-0105885_16	eggNOG-mapper	556268.OFAG_00835	transposase activity	NA
UHGV-0105885_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0105885_16	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0105885_16	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0105885_17	PHROG	phrog_1033	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0105885_17	UniRef90	UniRef90_UPI0013716616	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0105885_17	eggNOG-mapper	1042156.CXIVA_10310	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0105885_17	Pfam	PF20188	NA	DUF6551
UHGV-0105885_17	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0105885_17	Structural annotation	PF20188, MF_02015, TIGR04172, COG1475	NA	NA
UHGV-0105885_21	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105885_21	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-0105885_21	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0105885_21	Pfam	PF13479	AAA domain	AAA_24
UHGV-0105885_21	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0105885_23	PHROG	phrog_18107	NA	unknown function
UHGV-0105885_23	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0105885_23	Structural annotation	PF05037	NA	NA
UHGV-0105885_24	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0105885_24	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0105885_24	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0105885_24	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0105885_24	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0105885_24	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0105885_26	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105885_26	UniRef90	UniRef90_A0A291T890	DnaB_2 domain-containing protein	NA
UHGV-0105885_26	eggNOG-mapper	445974.CLORAM_02950	NA	NA
UHGV-0105885_26	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0105885_27	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0105885_27	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0105885_27	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-0105885_27	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0105885_27	Pfam	PF06745	KaiC	ATPase
UHGV-0105885_27	COG	COG0305	Replicative DNA helicase	NA
UHGV-0105885_27	Structural annotation	PF03796, PF19898, MF_04154, NF006458, TIGR01391, COG0305	NA	NA
UHGV-0105885_30	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0105885_30	eggNOG-mapper	428125.CLOLEP_01816	COG NOG12663 non supervised orthologous group	NA
UHGV-0105885_30	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0105885_31	PHROG	phrog_22543	NA	unknown function
UHGV-0105885_33	PHROG	phrog_10714	NA	unknown function
UHGV-0105885_33	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0105885_33	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0105885_34	PHROG	phrog_25732	NA	unknown function
UHGV-0105885_34	Structural annotation	NF011227	NA	NA
UHGV-0105885_36	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0105885_36	UniRef90	UniRef90_UPI001C3EDFA5	class I SAM-dependent methyltransferase	NA
UHGV-0105885_36	eggNOG-mapper	679201.HMPREF9334_00469	methyltransferase	NA
UHGV-0105885_36	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0105885_36	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0105885_36	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0105885_39	UniRef90	UniRef90_UPI001D08D6B6	DNA-packaging protein	NA
UHGV-0105885_43	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-0105885_43	Structural annotation	PF20075, TIGR03070	NA	NA
UHGV-0105885_44	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0105885_44	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0105885_44	UniRef90	UniRef90_UPI00164CEC80	recombinase family protein	NA
UHGV-0105885_44	eggNOG-mapper	1408423.JHYA01000001_gene988	Resolvase, N terminal domain	NA
UHGV-0105885_44	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105885_44	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0105885_44	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105885_44	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0105885_45	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0105885_45	UniRef90	UniRef90_A0A318EQM2	Putative phage terminase large subunit-like protein	NA
UHGV-0105885_45	eggNOG-mapper	1123263.AUKY01000015_gene1608	chromosome segregation	NA
UHGV-0105885_45	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0105885_45	COG	COG5410	NA	NA
UHGV-0105885_45	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0105885_47	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105885_47	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0105885_47	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105885_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105885_47	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0105885_49	PHROG	phrog_422	major head protein	head and packaging
UHGV-0105885_49	eggNOG-mapper	645991.Sgly_0340	NA	NA
UHGV-0105885_49	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0105885_51	UniRef90	UniRef90_UPI001D07B1DB	phage head-tail connector protein	NA
UHGV-0105885_51	eggNOG-mapper	936580.HMPREF1516_0716	NA	NA
UHGV-0105885_51	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0105885_51	Structural annotation	TIGR01560	NA	NA
UHGV-0105885_52	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0105885_53	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0105885_54	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0105885_55	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0105885_55	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0105885_56	UniRef90	UniRef90_A0A843HLA7	NA	NA
UHGV-0105885_56	Pfam	PF16478	NA	DUF5055
UHGV-0105885_56	Structural annotation	PF16478	NA	NA
UHGV-0105885_57	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0105885_58	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0105885_58	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0105885_58	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0105885_59	PHROG	phrog_13879	NA	unknown function
UHGV-0105885_59	eggNOG-mapper	1304866.K413DRAFT_0774	NA	NA
UHGV-0105885_59	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0105885_60	PHROG	phrog_18725	NA	unknown function
UHGV-0105885_60	eggNOG-mapper	665956.HMPREF1032_02705	NA	NA
UHGV-0105885_61	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0105885_62	UniRef90	UniRef90_R6NDD3	Glycosyl hydrolase family 25	NA
UHGV-0105885_62	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0105885_63	KOfam	K07273	acm; lysozyme	NA
UHGV-0105885_63	PHROG	phrog_291	endolysin	lysis
UHGV-0105885_63	UniRef90	UniRef90_A0A1C5NS63	Autolytic lysozyme	NA
UHGV-0105885_63	eggNOG-mapper	428125.CLOLEP_00561	Glycosyl hydrolases family 25	NA
UHGV-0105885_63	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105885_63	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105885_63	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA