UHGV-0105893

Genome information

Genome length 13,010 bps

CDS count 17

Completeness 97.39% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105893
vOTU ID	vOTU-063296
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253098
BioSample	SAMEA3708749
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.39% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.8
Jumbo phage	No

Genome content
Genome length	13,010 bps
GC content	49.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	17
CDS density	96.10%
Average CDS length	739.94 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105893_1	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0105893_1	Pfam	PF13229	Right handed beta helix region	Beta_helix
UHGV-0105893_1	Structural annotation	PF13229, TIGR04247, COG3420	NA	NA
UHGV-0105893_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0105893_3	UniRef90	UniRef90_A0A2Z4GUB7	Upper collar protein	NA
UHGV-0105893_3	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0105893_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0105893_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0105893_4	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0105893_4	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0105893_4	UniRef90	UniRef90_A0A4Q0U6L7	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0105893_4	eggNOG-mapper	907931.AEIZ01000001_gene425	Peptidase family M23	NA
UHGV-0105893_4	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0105893_4	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0105893_4	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0105893_5	Structural annotation	PF20934	NA	NA
UHGV-0105893_6	UniRef90	UniRef90_A0A843GUF8	Ig-like domain repeat protein	NA
UHGV-0105893_6	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0105893_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0105893_10	UniRef90	UniRef90_A0A843GFY2	Phage DNA encapsidation protein	NA
UHGV-0105893_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0105893_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0105893_11	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0105893_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0105893_11	UniRef90	UniRef90_A0A4Q0U6P8	DNA-directed DNA polymerase (Fragment)	NA
UHGV-0105893_11	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0105893_11	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA