UHGV-0105896

Genome information

Genome length 26,838 bps

CDS count 37

Completeness 69.95% (medium-quality)

geNomad score 0.9782

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105896
vOTU ID	vOTU-028926
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253164
BioSample	SAMEA3708820
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	69.95% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9782
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.32
Jumbo phage	No

Genome content
Genome length	26,838 bps
GC content	38.74%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	37
CDS density	93.00%
Average CDS length	677.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105896_1	UniRef90	UniRef90_R6RYB6	Thermophilus bacteriophage protein	NA
UHGV-0105896_1	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0105896_3	UniRef90	UniRef90_A0A3R6F7K5	XRE family transcriptional regulator	NA
UHGV-0105896_3	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0105896_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0105896_3	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0105896_4	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0105896_5	PHROG	phrog_14030	NA	unknown function
UHGV-0105896_5	UniRef90	UniRef90_UPI0018972B9E	peptidoglycan-binding protein	NA
UHGV-0105896_5	eggNOG-mapper	457412.RSAG_02810	NlpC/P60 family	NA
UHGV-0105896_5	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0105896_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0105896_5	Structural annotation	PF05382, PF01471, NF033742, NF038080, COG3409, COG0791	NA	NA
UHGV-0105896_6	PHROG	phrog_37799	NA	unknown function
UHGV-0105896_6	UniRef90	UniRef90_A0A3E5GSW8	Protein utxA	NA
UHGV-0105896_6	eggNOG-mapper	1151292.QEW_0990	Bacteriophage holin family	NA
UHGV-0105896_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0105896_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0105896_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0105896_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0105896_7	PHROG	phrog_2310	NA	unknown function
UHGV-0105896_8	UniRef90	UniRef90_UPI001D075611	GDSL-type esterase/lipase family protein	NA
UHGV-0105896_9	PHROG	phrog_16164	NA	unknown function
UHGV-0105896_9	eggNOG-mapper	457412.RSAG_01113	NA	NA
UHGV-0105896_9	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0105896_12	PHROG	phrog_6616	tail protein	tail
UHGV-0105896_12	UniRef90	UniRef90_A0A2Y9BMC1	Peptidase S74 domain-containing protein	NA
UHGV-0105896_12	eggNOG-mapper	476272.RUMHYD_01992	NA	NA
UHGV-0105896_12	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0105896_13	PHROG	phrog_1194	NA	unknown function
UHGV-0105896_13	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0105896_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0105896_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0105896_14	UniRef90	UniRef90_A0A2Y9BKW0	Phage-related protein	NA
UHGV-0105896_14	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0105896_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0105896_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0105896_15	PHROG	phrog_3845	NA	unknown function
UHGV-0105896_15	eggNOG-mapper	768710.DesyoDRAFT_5205	PFAM Tellurite resistance protein TerB	NA
UHGV-0105896_15	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0105896_15	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0105896_15	Structural annotation	PF13248	NA	NA
UHGV-0105896_16	PHROG	phrog_8355	NA	unknown function
UHGV-0105896_16	UniRef90	UniRef90_UPI000E439FD7	Gp15 family bacteriophage protein	NA
UHGV-0105896_16	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0105896_17	PHROG	phrog_8300	NA	unknown function
UHGV-0105896_17	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0105896_17	Structural annotation	PF06854	NA	NA
UHGV-0105896_18	PHROG	phrog_820	major tail protein	tail
UHGV-0105896_18	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0105896_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105896_19	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0105896_19	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0105896_19	eggNOG-mapper	483218.BACPEC_01150	NA	NA
UHGV-0105896_19	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0105896_19	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0105896_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0105896_20	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0105896_21	PHROG	phrog_8710	NA	unknown function
UHGV-0105896_21	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0105896_21	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0105896_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0105896_22	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0105896_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0105896_23	UniRef90	UniRef90_UPI001C03381A	phage capsid protein	NA
UHGV-0105896_23	eggNOG-mapper	663278.Ethha_1589	NA	NA
UHGV-0105896_23	Structural annotation	MF_04119	NA	NA
UHGV-0105896_24	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0105896_24	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0105896_25	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0105896_25	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0105896_25	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0105896_25	Structural annotation	PF14359	NA	NA
UHGV-0105896_26	PHROG	phrog_918	NA	unknown function
UHGV-0105896_26	UniRef90	UniRef90_UPI00189D39C2	NA	NA
UHGV-0105896_26	eggNOG-mapper	537007.BLAHAN_05515	NA	NA
UHGV-0105896_26	Pfam	PF19791	NA	DUF6275
UHGV-0105896_26	Structural annotation	PF19791	NA	NA
UHGV-0105896_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0105896_29	UniRef90	UniRef90_A0A1C5PIA8	Phage minor capsid protein 2	NA
UHGV-0105896_29	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0105896_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0105896_29	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0105896_29	Structural annotation	PF06152	NA	NA
UHGV-0105896_30	PHROG	phrog_25639	NA	unknown function
UHGV-0105896_30	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0105896_31	PHROG	phrog_533	portal protein	head and packaging
UHGV-0105896_31	UniRef90	UniRef90_A0A6L8XU40	Capsid protein	NA
UHGV-0105896_31	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0105896_31	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0105896_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105896_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0105896_32	UniRef90	UniRef90_UPI001C02BD5C	terminase	NA
UHGV-0105896_32	eggNOG-mapper	1304866.K413DRAFT_0811	Phage terminase, large subunit, PBSX family	NA
UHGV-0105896_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105896_32	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105896_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0105896_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0105896_33	UniRef90	UniRef90_UPI001C0332B0	terminase small subunit	NA
UHGV-0105896_33	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0105896_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0105896_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0105896_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0105896_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105896_34	UniRef90	UniRef90_UPI001C0ED9E5	NA	NA
UHGV-0105896_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0105896_35	PHROG	phrog_19011	NA	unknown function
UHGV-0105896_35	Structural annotation	PF18359, COG4466	NA	NA
UHGV-0105896_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0105896_37	PHROG	phrog_23072	DNA methyltransferase	other
UHGV-0105896_37	UniRef90	UniRef90_UPI001A9A61ED	DNA cytosine methyltransferase	NA
UHGV-0105896_37	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0105896_37	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0105896_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0105896_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0105896_37	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA