UHGV-0105908

Genome information

Genome length 38,264 bps

CDS count 63

Completeness 90.53% (high-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105908
vOTU ID	vOTU-069108
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_243389
BioSample	SAMEA3708802
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.53% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.57
Jumbo phage	No

Genome content
Genome length	38,264 bps
GC content	54.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	91.12%
Average CDS length	555.38 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105908_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0105908_2	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0105908_2	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0105908_2	eggNOG-mapper	641112.ACOK01000119_gene1439	Phage antirepressor protein	NA
UHGV-0105908_2	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0105908_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0105908_2	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0105908_2	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0105908_5	Structural annotation	PF16857, NF001981	NA	NA
UHGV-0105908_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105908_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105908_7	UniRef90	UniRef90_A0A564SVW9	HTH-type transcriptional regulator ImmR	NA
UHGV-0105908_7	eggNOG-mapper	748224.HMPREF9436_01444	NA	NA
UHGV-0105908_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105908_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105908_7	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105908_10	PHROG	phrog_888	NA	unknown function
UHGV-0105908_10	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0105908_10	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0105908_10	Pfam	PF14471	NA	DUF4428
UHGV-0105908_10	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0105908_10	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0105908_13	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0105908_13	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0105908_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105908_13	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105908_13	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0105908_14	KOfam	K14059	int; integrase	NA
UHGV-0105908_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0105908_14	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0105908_14	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0105908_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105908_14	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0105908_14	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0105908_16	Structural annotation	PF12510	NA	NA
UHGV-0105908_17	PHROG	phrog_20016	NA	unknown function
UHGV-0105908_17	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0105908_17	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0105908_17	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0105908_18	PHROG	phrog_16490	NA	unknown function
UHGV-0105908_18	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0105908_19	PHROG	phrog_22984	NA	unknown function
UHGV-0105908_20	PHROG	phrog_21718	NA	unknown function
UHGV-0105908_20	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0105908_21	PHROG	phrog_3754	NA	unknown function
UHGV-0105908_21	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA
UHGV-0105908_23	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0105908_23	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0105908_24	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0105908_24	UniRef90	UniRef90_UPI001C0BF339	transcriptional regulator	NA
UHGV-0105908_24	eggNOG-mapper	742740.HMPREF9474_00071	NA	NA
UHGV-0105908_24	Pfam	PF00847	AP2 domain	AP2
UHGV-0105908_24	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0105908_25	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0105908_28	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0105908_28	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0105908_28	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0105908_28	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0105908_28	Structural annotation	PF10651	NA	NA
UHGV-0105908_30	PHROG	phrog_15303	NA	unknown function
UHGV-0105908_30	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0105908_32	KOfam	K07273	acm; lysozyme	NA
UHGV-0105908_32	PHROG	phrog_291	endolysin	lysis
UHGV-0105908_32	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0105908_32	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0105908_32	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105908_32	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105908_32	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0105908_33	PHROG	phrog_2310	NA	unknown function
UHGV-0105908_34	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0105908_34	COG	COG5492	NA	NA
UHGV-0105908_35	PHROG	phrog_3558	tail protein	tail
UHGV-0105908_35	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0105908_35	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0105908_35	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0105908_35	COG	COG4926	Phage-related protein	NA
UHGV-0105908_35	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0105908_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0105908_36	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0105908_36	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0105908_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105908_36	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0105908_37	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0105908_37	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0105908_37	eggNOG-mapper	1216932.CM240_0683	tape measure	NA
UHGV-0105908_37	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0105908_37	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0105908_37	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0105908_37	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0105908_40	PHROG	phrog_885	major tail protein	tail
UHGV-0105908_40	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0105908_40	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0105908_41	Structural annotation	PF13554	NA	NA
UHGV-0105908_42	PHROG	phrog_17977	NA	unknown function
UHGV-0105908_42	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0105908_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0105908_44	PHROG	phrog_544	major head protein	head and packaging
UHGV-0105908_44	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0105908_44	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0105908_44	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0105908_45	Structural annotation	PF06810	NA	NA
UHGV-0105908_46	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0105908_46	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0105908_46	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0105908_47	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105908_47	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0105908_47	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0105908_47	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0105908_47	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0105908_47	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0105908_49	PHROG	phrog_8680	NA	unknown function
UHGV-0105908_49	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0105908_49	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0105908_49	Pfam	PF14386	NA	DUF4417
UHGV-0105908_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0105908_49	Structural annotation	PF14386	NA	NA
UHGV-0105908_51	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0105908_51	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0105908_51	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0105908_51	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0105908_51	COG	COG2369	NA	NA
UHGV-0105908_51	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0105908_52	PHROG	phrog_64	portal protein	head and packaging
UHGV-0105908_52	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0105908_52	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0105908_52	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0105908_52	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0105908_53	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0105908_53	PHROG	phrog_10250	NA	unknown function
UHGV-0105908_53	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0105908_53	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0105908_53	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0105908_53	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0105908_53	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0105908_53	COG	COG1783	Phage terminase large subunit	NA
UHGV-0105908_53	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0105908_54	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0105908_54	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0105908_54	Structural annotation	PF04218	NA	NA
UHGV-0105908_55	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0105908_55	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0105908_55	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0105908_55	Pfam	PF07374	NA	DUF1492
UHGV-0105908_55	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0105908_57	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0105908_57	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0105908_57	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0105908_57	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0105908_57	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0105908_57	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0105908_57	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0105908_58	PHROG	phrog_7711	NA	unknown function
UHGV-0105908_58	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0105908_61	Structural annotation	PF11417	NA	NA
UHGV-0105908_62	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0105908_62	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0105908_62	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0105908_62	eggNOG-mapper	877411.JMMA01000002_gene2052	NA	NA
UHGV-0105908_62	Pfam	PF19808	NA	DUF6291
UHGV-0105908_62	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0105908_62	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0105908_62	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA