UHGV-0105945

Genome information

vOTU vOTU-041955

Genome length 28,544 bps

CDS count 42

Completeness 62.89% (medium-quality)

geNomad score 0.9794

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105945
vOTU ID	vOTU-041955
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255060
BioSample	SAMEA3708794
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	62.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9794
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.46
Jumbo phage	No

Genome content
Genome length	28,544 bps
GC content	40.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	90.93%
Average CDS length	620.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105945_1	PHROG	phrog_28802	NA	unknown function
UHGV-0105945_1	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0105945_3	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0105945_3	UniRef90	UniRef90_UPI001D14C9C8	phage scaffolding protein	NA
UHGV-0105945_3	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0105945_3	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0105945_3	Structural annotation	PF06810	NA	NA
UHGV-0105945_4	PHROG	phrog_544	major head protein	head and packaging
UHGV-0105945_4	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0105945_4	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0105945_4	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0105945_4	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0105945_5	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0105945_5	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0105945_6	PHROG	phrog_28328	NA	unknown function
UHGV-0105945_6	eggNOG-mapper	428125.CLOLEP_01381	NA	NA
UHGV-0105945_7	PHROG	phrog_774	NA	unknown function
UHGV-0105945_7	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0105945_8	PHROG	phrog_1129	holin	lysis
UHGV-0105945_8	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0105945_8	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0105945_8	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0105945_8	Structural annotation	PF06946	NA	NA
UHGV-0105945_10	PHROG	phrog_8680	NA	unknown function
UHGV-0105945_10	UniRef90	UniRef90_UPI001C0F342A	NA	NA
UHGV-0105945_10	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0105945_10	Pfam	PF14386	NA	DUF4417
UHGV-0105945_10	Structural annotation	PF14386	NA	NA
UHGV-0105945_11	PHROG	phrog_3366	NA	unknown function
UHGV-0105945_11	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0105945_11	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0105945_12	PHROG	phrog_3266	tail completion	connector
UHGV-0105945_12	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0105945_12	Structural annotation	PF12691	NA	NA
UHGV-0105945_13	PHROG	phrog_3099	NA	unknown function
UHGV-0105945_13	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0105945_13	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0105945_14	PHROG	phrog_11299	NA	unknown function
UHGV-0105945_14	eggNOG-mapper	33035.JPJF01000106_gene3125	NA	NA
UHGV-0105945_14	Structural annotation	PF10666	NA	NA
UHGV-0105945_15	PHROG	phrog_706	NA	unknown function
UHGV-0105945_15	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0105945_15	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0105945_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0105945_15	Structural annotation	PF06854	NA	NA
UHGV-0105945_16	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0105945_16	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0105945_16	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0105945_16	COG	COG1511	NA	NA
UHGV-0105945_16	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0105945_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0105945_18	KOfam	K06237	COL4A; collagen type IV alpha	NA
UHGV-0105945_18	PHROG	phrog_6616	tail protein	tail
UHGV-0105945_18	UniRef90	UniRef90_A0A2V2D052	Peptidase S74 domain-containing protein	NA
UHGV-0105945_18	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0105945_18	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0105945_18	COG	COG4926	Phage-related protein	NA
UHGV-0105945_18	Structural annotation	PF05113, PF01835, PF03921, NF033848, COG3500	NA	NA
UHGV-0105945_21	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0105945_21	PHROG	phrog_1	integrase	integration and excision
UHGV-0105945_21	UniRef90	UniRef90_A0A417CA24	Integrase	NA
UHGV-0105945_21	eggNOG-mapper	1235793.C809_01951	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0105945_21	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0105945_21	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0105945_21	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0105945_21	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0105945_22	PHROG	phrog_6745	endolysin	lysis
UHGV-0105945_22	UniRef90	UniRef90_A0A412SB50	SH3b domain-containing protein	NA
UHGV-0105945_22	eggNOG-mapper	476272.RUMHYD_03304	autolytic lysozime (1,4-beta-N-acetylmuramidase), family 25 of glycosyl hydrolases	NA
UHGV-0105945_22	Pfam	PF05257	CHAP domain	CHAP
UHGV-0105945_22	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0105945_22	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0105945_22	Structural annotation	PF08239, PF09953, NF040678, COG3942, COG4991	NA	NA
UHGV-0105945_23	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105945_23	PHROG	phrog_95	integrase	integration and excision
UHGV-0105945_23	UniRef90	UniRef90_A0A2V2D7K6	Recombinase family protein	NA
UHGV-0105945_23	eggNOG-mapper	33035.JPJF01000109_gene439	Resolvase, N terminal domain	NA
UHGV-0105945_23	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105945_23	Pfam	PF07508	Recombinase	Recombinase
UHGV-0105945_23	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0105945_23	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105945_23	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0105945_24	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0105945_24	eggNOG-mapper	180332.JTGN01000005_gene2952	domain, Protein	NA
UHGV-0105945_24	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0105945_24	COG	COG2382	Enterochelin esterase or related enzyme	NA
UHGV-0105945_27	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0105945_27	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0105945_27	eggNOG-mapper	697281.Mahau_0099	PFAM Helix-turn-helix	NA
UHGV-0105945_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105945_27	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105945_27	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0105945_28	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0105945_28	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0105945_28	eggNOG-mapper	1235801.C822_00106	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105945_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105945_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105945_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105945_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105945_34	PHROG	phrog_5070	NA	unknown function
UHGV-0105945_34	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0105945_34	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0105945_34	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0105945_34	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0105945_39	Structural annotation	NF011879	NA	NA
UHGV-0105945_40	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0105945_41	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0105945_41	UniRef90	UniRef90_UPI0015715A02	AAA family ATPase	NA
UHGV-0105945_41	eggNOG-mapper	397290.C810_05165	AAA domain	NA
UHGV-0105945_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0105945_41	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0105945_42	PHROG	phrog_18107	NA	unknown function
UHGV-0105945_42	eggNOG-mapper	397290.C810_05167	NA	NA