UHGV-0105971

Genome information

Genome length 34,445 bps

CDS count 51

Completeness 99.20% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0105971
vOTU ID	vOTU-008301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_258809
BioSample	SAMEA3708862
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.20% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.45
Jumbo phage	No

Genome content
Genome length	34,445 bps
GC content	38.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	89.28%
Average CDS length	606.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0105971_1	PHROG	phrog_1558	NA	unknown function
UHGV-0105971_1	UniRef90	UniRef90_UPI001EE9266C	sigma-70 region 4 domain-containing protein	NA
UHGV-0105971_1	eggNOG-mapper	411470.RUMGNA_02058	NA	NA
UHGV-0105971_1	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0105971_2	PHROG	phrog_1066	NA	unknown function
UHGV-0105971_2	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-0105971_2	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0105971_3	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0105971_3	UniRef90	UniRef90_A0A7C9KZF1	Terminase large subunit	NA
UHGV-0105971_3	eggNOG-mapper	411470.RUMGNA_02062	NA	NA
UHGV-0105971_3	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0105971_3	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0105971_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0105971_3	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0105971_4	PHROG	phrog_12	portal protein	head and packaging
UHGV-0105971_4	UniRef90	UniRef90_A0A7C9LEF5	Phage portal protein	NA
UHGV-0105971_4	eggNOG-mapper	397290.C810_00419	Phage portal protein	NA
UHGV-0105971_4	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0105971_4	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0105971_4	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0105971_5	KOfam	K06904	NA	NA
UHGV-0105971_5	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0105971_5	UniRef90	UniRef90_A0A7C9L2H1	HK97 family phage prohead protease	NA
UHGV-0105971_5	eggNOG-mapper	411470.RUMGNA_02064	Caudovirus prohead serine protease	NA
UHGV-0105971_5	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0105971_5	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0105971_5	COG	COG3740	Phage head maturation protease	NA
UHGV-0105971_5	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0105971_6	PHROG	phrog_10	major head protein	head and packaging
UHGV-0105971_6	UniRef90	UniRef90_C9LCN3	Phage major capsid protein, HK97 family	NA
UHGV-0105971_6	eggNOG-mapper	411470.RUMGNA_02065	NA	NA
UHGV-0105971_6	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0105971_6	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0105971_6	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0105971_6	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0105971_7	UniRef90	UniRef90_A0A7C9LC86	SAP domain-containing protein	NA
UHGV-0105971_7	Pfam	PF02037	SAP domain	SAP
UHGV-0105971_7	Structural annotation	PF14000	NA	NA
UHGV-0105971_8	PHROG	phrog_5223	neck protein	connector
UHGV-0105971_8	UniRef90	UniRef90_A0A7C9LAV1	DNA-packaging protein	NA
UHGV-0105971_8	eggNOG-mapper	411470.RUMGNA_02067	NA	NA
UHGV-0105971_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0105971_9	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-0105971_9	eggNOG-mapper	1123263.AUKY01000046_gene471	NA	NA
UHGV-0105971_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0105971_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0105971_10	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0105971_10	UniRef90	UniRef90_A0A7C9LD40	HK97 gp10 family phage protein	NA
UHGV-0105971_10	eggNOG-mapper	1226322.HMPREF1545_00119	NA	NA
UHGV-0105971_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0105971_10	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0105971_11	Structural annotation	PF20765	NA	NA
UHGV-0105971_12	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0105971_12	eggNOG-mapper	457421.CBFG_03714	NA	NA
UHGV-0105971_12	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0105971_13	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0105971_13	Structural annotation	PF17388	NA	NA
UHGV-0105971_14	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0105971_14	UniRef90	UniRef90_A0A0M6WZJ0	PhageMin_Tail domain-containing protein	NA
UHGV-0105971_14	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0105971_14	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0105971_14	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0105971_14	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0105971_14	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0105971_15	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0105971_15	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0105971_15	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0105971_15	COG	COG4722	Phage-related protein YomH	NA
UHGV-0105971_15	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0105971_16	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0105971_16	UniRef90	UniRef90_A0A7C9HAK5	Prophage_tail domain-containing protein	NA
UHGV-0105971_16	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0105971_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0105971_16	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0105971_16	COG	COG4926	Phage-related protein	NA
UHGV-0105971_16	Structural annotation	PF14594, PF04862, PF20843, TIGR01665, NF033675, COG4926, COG4266	NA	NA
UHGV-0105971_19	PHROG	phrog_19280	NA	unknown function
UHGV-0105971_21	PHROG	phrog_199	holin	lysis
UHGV-0105971_21	UniRef90	UniRef90_A0A7C9KZL1	Holin	NA
UHGV-0105971_21	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0105971_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0105971_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0105971_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0105971_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0105971_22	KOfam	K07273	acm; lysozyme	NA
UHGV-0105971_22	PHROG	phrog_291	endolysin	lysis
UHGV-0105971_22	UniRef90	UniRef90_UPI001D04C319	glycoside hydrolase family 25 protein	NA
UHGV-0105971_22	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0105971_22	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0105971_22	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0105971_22	Structural annotation	PF01183, NF003627, COG3757, COG5492	NA	NA
UHGV-0105971_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0105971_25	PHROG	phrog_95	integrase	integration and excision
UHGV-0105971_25	UniRef90	UniRef90_U2RFE5	Resolvase protein	NA
UHGV-0105971_25	eggNOG-mapper	1256908.HMPREF0373_00206	Resolvase, N terminal domain	NA
UHGV-0105971_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0105971_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-0105971_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0105971_25	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0105971_26	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0105971_26	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0105971_26	UniRef90	UniRef90_A0A3D5LSQ6	XRE family transcriptional regulator	NA
UHGV-0105971_26	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0105971_26	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0105971_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0105971_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0105971_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0105971_28	UniRef90	UniRef90_A0A417W960	XRE family transcriptional regulator	NA
UHGV-0105971_28	eggNOG-mapper	1235793.C809_03587	Helix-turn-helix XRE-family like proteins	NA
UHGV-0105971_28	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0105971_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0105971_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0105971_32	eggNOG-mapper	411468.CLOSCI_00322	NA	NA
UHGV-0105971_41	eggNOG-mapper	1280682.AUKA01000005_gene2560	NA	NA
UHGV-0105971_41	Pfam	PF18941	NA	DUF5688
UHGV-0105971_42	PHROG	phrog_26861	NA	unknown function
UHGV-0105971_42	UniRef90	UniRef90_A0A7C9LD13	Single-stranded DNA-binding protein	NA
UHGV-0105971_42	eggNOG-mapper	1292035.H476_3036	Single-strand binding protein family	NA
UHGV-0105971_42	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0105971_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0105971_42	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0105971_43	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0105971_43	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0105971_43	Structural annotation	PF21578	NA	NA
UHGV-0105971_44	PHROG	phrog_824	NA	unknown function
UHGV-0105971_44	UniRef90	UniRef90_A0A7C9H491	VRR-NUC domain-containing protein	NA
UHGV-0105971_44	eggNOG-mapper	411470.RUMGNA_02049	VRR-NUC domain	NA
UHGV-0105971_44	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0105971_44	Structural annotation	PF08774	NA	NA
UHGV-0105971_45	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0105971_46	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0105971_48	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0105971_48	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0105971_48	UniRef90	UniRef90_A0A7C9H418	AAA family ATPase	NA
UHGV-0105971_48	eggNOG-mapper	411470.RUMGNA_02050	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0105971_48	Pfam	PF13614	AAA domain	AAA_31
UHGV-0105971_48	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0105971_48	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0105971_49	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0105971_49	PHROG	phrog_15982	NA	unknown function
UHGV-0105971_49	UniRef90	UniRef90_A0A7C9HAH3	NA	NA
UHGV-0105971_49	eggNOG-mapper	411470.RUMGNA_02052	NA	NA
UHGV-0105971_49	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0105971_49	Pfam	PF12961	NA	DUF3850
UHGV-0105971_49	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0105971_49	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0105971_51	UniRef90	UniRef90_U2CXQ8	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0105971_51	eggNOG-mapper	203119.Cthe_1750	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0105971_51	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0105971_51	Structural annotation	PF13560, TIGR02612, COG1396	NA	NA