UHGV-0106056

Genome information

Genome length 17,198 bps

CDS count 24

Completeness 81.49% (medium-quality)

geNomad score 0.9809

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106056
vOTU ID	vOTU-042306
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257010
BioSample	SAMEA3708813
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	81.49% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9809
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.62
Jumbo phage	No

Genome content
Genome length	17,198 bps
GC content	45.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	93.18%
Average CDS length	670.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106056_1	Structural annotation	PF13742, MF_01959, NF009635, COG3390	NA	NA
UHGV-0106056_4	Structural annotation	MF_00273	NA	NA
UHGV-0106056_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0106056_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0106056_5	UniRef90	UniRef90_UPI000C768D7D	single-stranded DNA-binding protein	NA
UHGV-0106056_5	eggNOG-mapper	877414.ATWA01000008_gene232	Single-strand binding protein family	NA
UHGV-0106056_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0106056_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0106056_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0106056_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0106056_5	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0106056_13	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0106056_13	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0106056_13	UniRef90	UniRef90_A0A843HKN8	DNA-directed DNA polymerase	NA
UHGV-0106056_13	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0106056_13	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0106056_13	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0106056_15	PHROG	phrog_2150	terminase	head and packaging
UHGV-0106056_15	UniRef90	UniRef90_A0A843HRH6	Phage DNA encapsidation protein	NA
UHGV-0106056_15	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0106056_15	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0106056_15	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0106056_16	PHROG	phrog_21357	endolysin	lysis
UHGV-0106056_16	UniRef90	UniRef90_R5LUK1	Peptidase C51 domain-containing protein	NA
UHGV-0106056_16	eggNOG-mapper	243164.DET1070	SMART Glycoside hydrolase, family 25 subgroup	NA
UHGV-0106056_16	Pfam	PF05257	CHAP domain	CHAP
UHGV-0106056_16	COG	COG1388	LysM repeat	NA
UHGV-0106056_16	Structural annotation	PF10030, TIGR02594, COG4322	NA	NA
UHGV-0106056_18	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0106056_19	PHROG	phrog_2038	upper collar connector	connector
UHGV-0106056_19	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0106056_19	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0106056_19	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0106056_19	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0106056_20	PHROG	phrog_2248	tail protein	tail
UHGV-0106056_20	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0106056_20	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-0106056_20	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0106056_20	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0106056_20	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0106056_21	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0106056_21	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0106056_21	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0106056_21	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0106056_21	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0106056_23	PHROG	phrog_21357	endolysin	lysis
UHGV-0106056_23	UniRef90	UniRef90_A0A3R6VA19	CHAP domain-containing protein	NA
UHGV-0106056_23	eggNOG-mapper	665950.HMPREF1025_01328	CHAP domain	NA
UHGV-0106056_23	Pfam	PF05257	CHAP domain	CHAP
UHGV-0106056_23	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0106056_23	COG	COG1388	LysM repeat	NA
UHGV-0106056_23	Structural annotation	PF18013	NA	NA
UHGV-0106056_24	PHROG	phrog_4898	holin	lysis