UHGV-0106116

Genome information

Genome length 24,286 bps

CDS count 36

Completeness 67.81% (medium-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106116
vOTU ID	vOTU-026548
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_267631
BioSample	SAMEA3879593
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.14
Jumbo phage	No

Genome content
Genome length	24,286 bps
GC content	44.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	92.95%
Average CDS length	633.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106116_1	UniRef90	UniRef90_UPI00192C4378	NUDIX hydrolase	NA
UHGV-0106116_1	eggNOG-mapper	500632.CLONEX_02569	NA	NA
UHGV-0106116_2	KOfam	K01515	nudF; ADP-ribose pyrophosphatase [EC:3.6.1.13 3.6.1.-]	NA
UHGV-0106116_2	UniRef90	UniRef90_A0A6N3V1L0	NUDIX hydrolase	NA
UHGV-0106116_2	eggNOG-mapper	500632.CLONEX_02570	Hydrolase, nudix family	NA
UHGV-0106116_2	Pfam	PF00293	NUDIX domain	NUDIX
UHGV-0106116_2	COG	COG1051	ADP-ribose pyrophosphatase YjhB, NUDIX family	NA
UHGV-0106116_4	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0106116_4	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0106116_4	UniRef90	UniRef90_R6RQR6	Growth inhibitor	NA
UHGV-0106116_4	eggNOG-mapper	1211844.CBLM010000146_gene40	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0106116_4	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0106116_4	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0106116_4	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0106116_5	KOfam	K14059	int; integrase	NA
UHGV-0106116_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0106116_5	UniRef90	UniRef90_A0A174ZR64	Tyrosine recombinase XerD	NA
UHGV-0106116_5	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0106116_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106116_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0106116_5	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0106116_7	PHROG	phrog_1914	NA	unknown function
UHGV-0106116_7	UniRef90	UniRef90_B0MKY6	Putative toxin-antitoxin system, toxin component	NA
UHGV-0106116_7	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0106116_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0106116_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0106116_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0106116_8	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0106116_8	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0106116_8	UniRef90	UniRef90_A0A8F2U0U1	XRE family transcriptional regulator	NA
UHGV-0106116_8	eggNOG-mapper	411469.EUBHAL_01994	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0106116_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0106116_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0106116_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106116_8	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0106116_9	UniRef90	UniRef90_L0P7D3	Cro-like protein phage associated	NA
UHGV-0106116_9	eggNOG-mapper	665950.HMPREF1025_01418	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106116_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106116_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106116_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0106116_10	Structural annotation	PF07878	NA	NA
UHGV-0106116_11	UniRef90	UniRef90_D4JVL4	DNA binding domain, excisionase family	NA
UHGV-0106116_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0106116_11	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0106116_11	COG	COG1762	Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)	NA
UHGV-0106116_13	Pfam	PF09643	YopX protein	YopX
UHGV-0106116_14	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0106116_14	PHROG	phrog_11371	NA	unknown function
UHGV-0106116_14	UniRef90	UniRef90_A0A1C6BWK1	Modification methylase VspI	NA
UHGV-0106116_14	eggNOG-mapper	926569.ANT_31700	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0106116_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0106116_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0106116_14	Structural annotation	PF20473, MF_02217, NF001556, COG0742	NA	NA
UHGV-0106116_15	Structural annotation	PF04218, NF040595, COG3415	NA	NA
UHGV-0106116_17	PHROG	phrog_27517	NA	unknown function
UHGV-0106116_18	PHROG	phrog_38338	NA	unknown function
UHGV-0106116_18	eggNOG-mapper	693746.OBV_24020	NA	NA
UHGV-0106116_19	PHROG	phrog_8470	NA	unknown function
UHGV-0106116_19	UniRef90	UniRef90_UPI0019175B9C	PcfJ domain-containing protein	NA
UHGV-0106116_19	eggNOG-mapper	641112.ACOK01000073_gene2870	PcfJ-like protein	NA
UHGV-0106116_19	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0106116_19	Structural annotation	PF14284	NA	NA
UHGV-0106116_20	PHROG	phrog_15609	NA	unknown function
UHGV-0106116_20	UniRef90	UniRef90_A0A373VML2	NA	NA
UHGV-0106116_20	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0106116_20	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0106116_21	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0106116_21	UniRef90	UniRef90_R6R2R3	Siphovirus Gp157	NA
UHGV-0106116_21	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0106116_21	Structural annotation	PF05565	NA	NA
UHGV-0106116_22	PHROG	phrog_1366	NA	unknown function
UHGV-0106116_22	UniRef90	UniRef90_R6S946	AAA domain-containing protein	NA
UHGV-0106116_22	eggNOG-mapper	1410670.JHXF01000015_gene2269	AAA domain	NA
UHGV-0106116_22	Pfam	PF13479	AAA domain	AAA_24
UHGV-0106116_22	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0106116_22	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0106116_23	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0106116_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0106116_23	UniRef90	UniRef90_R6RJE0	DNA or RNA helicases of superfamily II	NA
UHGV-0106116_23	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0106116_23	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0106116_23	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0106116_23	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0106116_23	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0106116_23	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0106116_24	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0106116_24	UniRef90	UniRef90_A0A6N4AKU7	VRR-NUC domain-containing protein	NA
UHGV-0106116_24	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0106116_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0106116_24	Structural annotation	PF01870, MF_00130, NF002581, COG1591	NA	NA
UHGV-0106116_25	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0106116_25	UniRef90	UniRef90_UPI0019172865	NA	NA
UHGV-0106116_25	eggNOG-mapper	1002809.SSIL_1401	NA	NA
UHGV-0106116_25	Pfam	PF05037	NA	DUF669
UHGV-0106116_25	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0106116_26	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0106116_26	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0106116_26	UniRef90	UniRef90_A0A6N4ALN1	SF3 helicase domain-containing protein	NA
UHGV-0106116_26	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0106116_26	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0106116_26	Pfam	PF19263	NA	DUF5906
UHGV-0106116_26	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0106116_26	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0106116_26	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0106116_26	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0106116_29	PHROG	phrog_924	NA	unknown function
UHGV-0106116_29	UniRef90	UniRef90_UPI001EF68F75	NA	NA
UHGV-0106116_29	Pfam	PF04448	NA	DUF551
UHGV-0106116_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0106116_31	UniRef90	UniRef90_A0A7C6P5S1	RNA polymerase subunit sigma-24	NA
UHGV-0106116_31	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0106116_31	Structural annotation	PF04545	NA	NA
UHGV-0106116_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0106116_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0106116_33	UniRef90	UniRef90_A0A174ZU67	Terminase small subunit	NA
UHGV-0106116_33	eggNOG-mapper	1160721.RBI_II00483	DNA packaging	NA
UHGV-0106116_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0106116_33	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0106116_33	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0106116_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106116_34	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0106116_34	UniRef90	UniRef90_A0A174ZXT9	Phage terminase, large subunit, PBSX family	NA
UHGV-0106116_34	eggNOG-mapper	246194.CHY_1680	Terminase RNAseH like domain	NA
UHGV-0106116_34	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0106116_34	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0106116_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106116_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106116_34	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0106116_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0106116_35	UniRef90	UniRef90_A0A174ZZR5	Phage portal protein, SPP1 family	NA
UHGV-0106116_35	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0106116_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0106116_35	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0106116_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0106116_36	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0106116_36	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0106116_36	COG	COG2369	NA	NA