UHGV-0106133

Genome information

Genome length 41,835 bps

CDS count 81

Completeness 100.00% (complete)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106133
vOTU ID	vOTU-005786
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248649
BioSample	SAMEA3708798
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.08
Jumbo phage	No

Genome content
Genome length	41,835 bps
GC content	53.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	81
CDS density	93.85%
Average CDS length	488.89 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106133_1	PHROG	phrog_27197	NA	unknown function
UHGV-0106133_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0106133_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0106133_2	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106133_2	UniRef90	UniRef90_A0A1Y4W4B5	YqaJ domain-containing protein	NA
UHGV-0106133_2	eggNOG-mapper	428125.CLOLEP_01823	YqaJ viral recombinase family	NA
UHGV-0106133_2	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0106133_2	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0106133_2	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0106133_2	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0106133_3	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0106133_3	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106133_3	UniRef90	UniRef90_A0A1Y4W4R3	Recombinase RecT	NA
UHGV-0106133_3	eggNOG-mapper	1226322.HMPREF1545_00015	RecT family	NA
UHGV-0106133_3	Pfam	PF03837	RecT family	RecT
UHGV-0106133_3	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0106133_3	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0106133_3	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0106133_4	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0106133_4	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0106133_4	UniRef90	UniRef90_R6LVK0	Single-stranded DNA-binding protein	NA
UHGV-0106133_4	eggNOG-mapper	1007096.BAGW01000007_gene1922	Single-strand binding protein family	NA
UHGV-0106133_4	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0106133_4	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0106133_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0106133_4	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0106133_4	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0106133_5	PHROG	phrog_16304	NA	unknown function
UHGV-0106133_5	UniRef90	UniRef90_A0A3D3Y5P0	NA	NA
UHGV-0106133_5	eggNOG-mapper	1226322.HMPREF1545_00016	HNH endonuclease	NA
UHGV-0106133_5	Pfam	PF19808	NA	DUF6291
UHGV-0106133_5	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0106133_5	Structural annotation	PF19808	NA	NA
UHGV-0106133_7	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0106133_7	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0106133_7	UniRef90	UniRef90_G4KRB8	Cytosine-specific methyltransferase	NA
UHGV-0106133_7	eggNOG-mapper	693746.OBV_01900	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0106133_7	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0106133_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0106133_7	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0106133_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0106133_7	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0106133_8	PHROG	phrog_60	NA	unknown function
UHGV-0106133_8	Pfam	PF04448	NA	DUF551
UHGV-0106133_8	Structural annotation	NF041588	NA	NA
UHGV-0106133_9	PHROG	phrog_3136	NA	unknown function
UHGV-0106133_9	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0106133_9	Pfam	PF04266	ASCH domain	ASCH
UHGV-0106133_9	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0106133_9	Structural annotation	PF12961, NF002008, COG4933	NA	NA
UHGV-0106133_10	PHROG	phrog_38832	NA	unknown function
UHGV-0106133_10	eggNOG-mapper	665956.HMPREF1032_00143	NA	NA
UHGV-0106133_11	Structural annotation	PF12092	NA	NA
UHGV-0106133_12	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106133_12	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0106133_12	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0106133_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0106133_12	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0106133_12	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0106133_13	PHROG	phrog_31029	NA	unknown function
UHGV-0106133_14	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0106133_14	UniRef90	UniRef90_A0A412AWF1	Restriction alleviation protein, Lar family	NA
UHGV-0106133_14	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0106133_14	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0106133_14	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0106133_14	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0106133_16	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0106133_16	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0106133_19	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0106133_19	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0106133_20	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0106133_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0106133_21	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0106133_21	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0106133_21	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0106133_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0106133_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0106133_21	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0106133_22	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106133_22	PHROG	phrog_10250	NA	unknown function
UHGV-0106133_22	UniRef90	UniRef90_UPI0018A99FCF	PBSX family phage terminase large subunit	NA
UHGV-0106133_22	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0106133_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0106133_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0106133_22	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106133_22	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106133_22	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0106133_23	PHROG	phrog_64	portal protein	head and packaging
UHGV-0106133_23	UniRef90	UniRef90_UPI001AA0B7FF	phage portal protein	NA
UHGV-0106133_23	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0106133_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0106133_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0106133_24	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0106133_27	PHROG	phrog_10898	NA	unknown function
UHGV-0106133_27	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0106133_27	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-0106133_27	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-0106133_27	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0106133_28	PHROG	phrog_10898	NA	unknown function
UHGV-0106133_28	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0106133_30	PHROG	phrog_35892	NA	unknown function
UHGV-0106133_30	UniRef90	UniRef90_A0A843FMD8	Leucine-rich repeat domain-containing protein	NA
UHGV-0106133_30	eggNOG-mapper	471875.RUMLAC_02240	dockerin type I repeat-containing domain protein	NA
UHGV-0106133_30	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0106133_30	COG	COG5492	NA	NA
UHGV-0106133_30	Structural annotation	PF13306, NF041351	NA	NA
UHGV-0106133_32	Structural annotation	PF14600	NA	NA
UHGV-0106133_33	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0106133_33	UniRef90	UniRef90_A0A810PSD3	Phage_Mu_F domain-containing protein	NA
UHGV-0106133_33	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0106133_33	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0106133_33	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0106133_33	COG	COG2369	NA	NA
UHGV-0106133_33	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0106133_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0106133_34	UniRef90	UniRef90_A0A7X5E1T2	HK97 gp10 family phage protein	NA
UHGV-0106133_34	eggNOG-mapper	764299.STRIC_1434	NA	NA
UHGV-0106133_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0106133_34	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0106133_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0106133_35	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0106133_35	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0106133_35	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0106133_35	Structural annotation	PF06810	NA	NA
UHGV-0106133_36	PHROG	phrog_544	major head protein	head and packaging
UHGV-0106133_36	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0106133_36	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0106133_36	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0106133_36	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0106133_38	PHROG	phrog_17977	NA	unknown function
UHGV-0106133_38	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0106133_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0106133_39	Structural annotation	PF11367	NA	NA
UHGV-0106133_40	PHROG	phrog_885	major tail protein	tail
UHGV-0106133_40	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0106133_40	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0106133_40	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0106133_41	PHROG	phrog_18646	NA	unknown function
UHGV-0106133_41	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0106133_43	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0106133_43	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0106133_43	COG	COG5412	Phage-related protein	NA
UHGV-0106133_43	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0106133_44	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0106133_45	PHROG	phrog_13879	NA	unknown function
UHGV-0106133_45	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0106133_45	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0106133_46	PHROG	phrog_18725	NA	unknown function
UHGV-0106133_46	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0106133_47	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0106133_47	Structural annotation	PF20055, MF_03008, NF010730, COG3940	NA	NA
UHGV-0106133_48	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0106133_48	Structural annotation	PF07484	NA	NA
UHGV-0106133_51	PHROG	phrog_6918	holin	lysis
UHGV-0106133_51	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0106133_51	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0106133_51	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0106133_51	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0106133_52	PHROG	phrog_14030	NA	unknown function
UHGV-0106133_52	UniRef90	UniRef90_R6LL81	SLH domain-containing protein	NA
UHGV-0106133_52	eggNOG-mapper	1121866.AUGK01000003_gene1444	amidase activity	NA
UHGV-0106133_52	COG	COG1705	Flagellum-specific peptidoglycan hydrolase FlgJ	NA
UHGV-0106133_53	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0106133_56	eggNOG-mapper	760568.Desku_0885	NA	NA
UHGV-0106133_56	Structural annotation	PF14528, PF05204, MF_01420, TIGR00647, COG3780	NA	NA
UHGV-0106133_57	UniRef90	UniRef90_UPI00164AED9E	helix-turn-helix domain-containing protein	NA
UHGV-0106133_57	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0106133_57	Structural annotation	PF13560, NF040522, COG2944	NA	NA
UHGV-0106133_58	PHROG	phrog_3754	NA	unknown function
UHGV-0106133_58	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0106133_59	PHROG	phrog_21718	NA	unknown function
UHGV-0106133_59	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0106133_60	PHROG	phrog_22984	NA	unknown function
UHGV-0106133_61	PHROG	phrog_16490	NA	unknown function
UHGV-0106133_61	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0106133_63	PHROG	phrog_20016	NA	unknown function
UHGV-0106133_63	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0106133_63	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0106133_63	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0106133_64	Structural annotation	PF12510	NA	NA
UHGV-0106133_65	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0106133_66	KOfam	K14059	int; integrase	NA
UHGV-0106133_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0106133_66	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0106133_66	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0106133_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106133_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0106133_66	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0106133_67	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106133_67	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106133_67	Structural annotation	PF12844	NA	NA
UHGV-0106133_69	Structural annotation	PF03965, MF_01819, NF012168, COG3682	NA	NA
UHGV-0106133_72	UniRef90	UniRef90_A0A810Q1T1	HTH cro/C1-type domain-containing protein	NA
UHGV-0106133_72	eggNOG-mapper	46256.BBIK01000005_gene1058	PFAM helix-turn-helix domain protein	NA
UHGV-0106133_72	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0106133_72	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0106133_74	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0106133_74	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106133_74	UniRef90	UniRef90_A0A810PZI0	HTH cro/C1-type domain-containing protein	NA
UHGV-0106133_74	eggNOG-mapper	1122143.AUEG01000004_gene1250	Helix-turn-helix domain	NA
UHGV-0106133_74	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0106133_74	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106133_74	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0106133_75	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0106133_75	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0106133_75	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0106133_76	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0106133_76	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0106133_76	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0106133_77	Structural annotation	PF10548	NA	NA
UHGV-0106133_81	PHROG	phrog_4433	NA	unknown function
UHGV-0106133_81	eggNOG-mapper	106648.BBLJ01000054_gene3814	regulation of DNA-templated transcription, elongation	NA
UHGV-0106133_81	COG	COG5164	Transcription elongation factor SPT5	NA