UHGV-0106162

Genome information

Genome length 34,153 bps

CDS count 51

Completeness 91.51% (high-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106162
vOTU ID	vOTU-064687
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255583
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.59
Jumbo phage	No

Genome content
Genome length	34,153 bps
GC content	45.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.09%
Average CDS length	614.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106162_1	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-0106162_2	Structural annotation	PF05939, TIGR01633, COG4718	NA	NA
UHGV-0106162_3	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0106162_3	UniRef90	UniRef90_A0A3D5KWG5	PhageMin_Tail domain-containing protein	NA
UHGV-0106162_3	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0106162_3	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0106162_3	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0106162_3	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0106162_3	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0106162_4	PHROG	phrog_706	NA	unknown function
UHGV-0106162_4	UniRef90	UniRef90_A0A315Y4B3	Bacteriophage Gp15 protein	NA
UHGV-0106162_4	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0106162_4	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0106162_4	Structural annotation	PF06854	NA	NA
UHGV-0106162_5	PHROG	phrog_4450	NA	unknown function
UHGV-0106162_5	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0106162_5	Pfam	PF20378	NA	DUF6673
UHGV-0106162_5	Structural annotation	PF20378	NA	NA
UHGV-0106162_6	PHROG	phrog_3099	NA	unknown function
UHGV-0106162_6	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-0106162_6	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0106162_7	PHROG	phrog_3266	tail completion	connector
UHGV-0106162_7	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-0106162_7	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0106162_7	Structural annotation	PF12691	NA	NA
UHGV-0106162_8	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0106162_8	UniRef90	UniRef90_A0A352TI11	Capsid protein	NA
UHGV-0106162_8	eggNOG-mapper	1160721.RBI_II00534	Minor capsid protein	NA
UHGV-0106162_8	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0106162_8	Structural annotation	PF11114	NA	NA
UHGV-0106162_9	PHROG	phrog_3366	NA	unknown function
UHGV-0106162_9	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-0106162_9	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0106162_10	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0106162_10	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-0106162_11	PHROG	phrog_422	major head protein	head and packaging
UHGV-0106162_11	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0106162_11	eggNOG-mapper	641112.ACOK01000073_gene2894	NA	NA
UHGV-0106162_11	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0106162_12	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0106162_12	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-0106162_12	eggNOG-mapper	641112.ACOK01000073_gene2893	Phage minor structural protein GP20	NA
UHGV-0106162_12	Structural annotation	PF06810	NA	NA
UHGV-0106162_13	PHROG	phrog_774	NA	unknown function
UHGV-0106162_13	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0106162_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0106162_14	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-0106162_14	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-0106162_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0106162_14	COG	COG2369	NA	NA
UHGV-0106162_14	Structural annotation	PF06152	NA	NA
UHGV-0106162_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0106162_15	UniRef90	UniRef90_UPI001C1263AE	phage portal protein	NA
UHGV-0106162_15	eggNOG-mapper	641112.ACOK01000073_gene2889	NA	NA
UHGV-0106162_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0106162_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0106162_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106162_16	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0106162_16	UniRef90	UniRef90_A0A315Y4A8	PBSX family phage terminase large subunit	NA
UHGV-0106162_16	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-0106162_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0106162_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106162_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106162_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0106162_17	PHROG	phrog_2412	NA	unknown function
UHGV-0106162_17	UniRef90	UniRef90_A0A8B6LDF0	NA	NA
UHGV-0106162_17	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0106162_17	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0106162_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0106162_18	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0106162_20	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0106162_20	UniRef90	UniRef90_A0A8G1WT09	MazG domain-containing protein	NA
UHGV-0106162_20	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0106162_23	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0106162_23	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0106162_23	UniRef90	UniRef90_A0A1H7KWC5	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase	NA
UHGV-0106162_23	eggNOG-mapper	537013.CLOSTMETH_01340	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0106162_23	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0106162_23	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0106162_23	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0106162_24	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0106162_27	Structural annotation	PF13613	NA	NA
UHGV-0106162_28	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0106162_28	UniRef90	UniRef90_A0A318KSV9	DnaD/phage-associated family protein	NA
UHGV-0106162_28	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0106162_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0106162_28	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0106162_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0106162_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0106162_29	UniRef90	UniRef90_R5VJF6	Single-stranded DNA-binding protein	NA
UHGV-0106162_29	eggNOG-mapper	1514668.JOOA01000002_gene3349	Single-stranded DNA-binding protein	NA
UHGV-0106162_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0106162_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0106162_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0106162_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0106162_29	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0106162_30	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0106162_30	UniRef90	UniRef90_A0A352DNR2	ERCC4 domain-containing protein	NA
UHGV-0106162_30	eggNOG-mapper	1499683.CCFF01000005_gene55	ERCC4 domain	NA
UHGV-0106162_30	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0106162_30	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0106162_31	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106162_31	UniRef90	UniRef90_A0A352TI30	NA	NA
UHGV-0106162_31	eggNOG-mapper	1120998.AUFC01000030_gene2216	NA	NA
UHGV-0106162_31	Pfam	PF12684	NA	DUF3799
UHGV-0106162_31	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0106162_31	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0106162_32	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106162_32	UniRef90	UniRef90_UPI001EE8E2AA	recombinase RecT	NA
UHGV-0106162_32	eggNOG-mapper	861454.HMPREF9099_00346	NA	NA
UHGV-0106162_32	Pfam	PF03837	RecT family	RecT
UHGV-0106162_32	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0106162_40	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0106162_40	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0106162_40	UniRef90	UniRef90_J4TS99	Phage antirepressor protein KilAC domain protein	NA
UHGV-0106162_40	eggNOG-mapper	936573.HMPREF1147_1710	Phage antirepressor protein	NA
UHGV-0106162_40	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0106162_40	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0106162_40	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0106162_40	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0106162_41	Structural annotation	PF17888	NA	NA
UHGV-0106162_42	UniRef90	UniRef90_A0A7W8MVA4	Plasmid maintenance system antidote protein VapI	NA
UHGV-0106162_42	eggNOG-mapper	293826.Amet_0839	NA	NA
UHGV-0106162_45	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0106162_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106162_45	UniRef90	UniRef90_B0MKY5	DNA-binding helix-turn-helix protein	NA
UHGV-0106162_45	eggNOG-mapper	411473.RUMCAL_00406	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106162_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106162_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106162_45	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0106162_46	UniRef90	UniRef90_A0A3C0II80	DZANK-type domain-containing protein	NA
UHGV-0106162_46	eggNOG-mapper	575594.ACOH01000003_gene833	zinc-ribbon domain	NA
UHGV-0106162_46	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0106162_47	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0106162_47	UniRef90	UniRef90_A0A0H5Q879	Rep_3 domain-containing protein	NA
UHGV-0106162_47	eggNOG-mapper	936596.HMPREF1495_0080	Initiator Replication protein	NA
UHGV-0106162_47	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0106162_47	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0106162_47	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0106162_47	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0106162_48	KOfam	K07273	acm; lysozyme	NA
UHGV-0106162_48	PHROG	phrog_291	endolysin	lysis
UHGV-0106162_48	UniRef90	UniRef90_A0A3D5KVU8	Peptidase_M15_3 domain-containing protein	NA
UHGV-0106162_48	eggNOG-mapper	1341157.RF007C_02545	hydrolase, family 25	NA
UHGV-0106162_48	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0106162_48	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0106162_48	COG	COG3108	NA	NA
UHGV-0106162_48	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-0106162_49	PHROG	phrog_25567	NA	unknown function
UHGV-0106162_49	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0106162_51	PHROG	phrog_199	holin	lysis
UHGV-0106162_51	UniRef90	UniRef90_UPI001D0ECA44	phage holin family protein	NA
UHGV-0106162_51	eggNOG-mapper	742740.HMPREF9474_02333	Bacteriophage holin family	NA
UHGV-0106162_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0106162_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0106162_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0106162_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA