UHGV-0106163

Genome information

Genome length 40,068 bps

CDS count 61

Completeness 99.90% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106163
vOTU ID	vOTU-064686
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253461
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	34
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	101.66
Jumbo phage	No

Genome content
Genome length	40,068 bps
GC content	45.01%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.55%
Average CDS length	598.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106163_1	KOfam	K14059	int; integrase	NA
UHGV-0106163_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0106163_1	UniRef90	UniRef90_B4XYR4	Integrase	NA
UHGV-0106163_1	eggNOG-mapper	1423816.BACQ01000027_gene974	Belongs to the 'phage' integrase family	NA
UHGV-0106163_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0106163_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106163_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0106163_1	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0106163_2	PHROG	phrog_4378	NA	unknown function
UHGV-0106163_2	UniRef90	UniRef90_A0A829GRC5	NA	NA
UHGV-0106163_2	eggNOG-mapper	1423732.BALS01000098_gene1435	NA	NA
UHGV-0106163_3	PHROG	phrog_9771	NA	unknown function
UHGV-0106163_3	UniRef90	UniRef90_A0A2R7DTK8	2-hydroxymuconic semialdehyde hydrolase	NA
UHGV-0106163_3	eggNOG-mapper	543734.LCABL_10810	NA	NA
UHGV-0106163_4	PHROG	phrog_11626	NA	unknown function
UHGV-0106163_4	UniRef90	UniRef90_A0A5P8M5X9	Transporter	NA
UHGV-0106163_4	eggNOG-mapper	1423732.BALS01000043_gene2717	NA	NA
UHGV-0106163_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0106163_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0106163_5	UniRef90	UniRef90_A0A510WNV2	HTH cro/C1-type domain-containing protein	NA
UHGV-0106163_5	eggNOG-mapper	51369.O64370_9CAUD	sequence-specific DNA binding	NA
UHGV-0106163_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106163_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0106163_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0106163_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0106163_6	UniRef90	UniRef90_A0A510WQI3	HTH cro/C1-type domain-containing protein	NA
UHGV-0106163_6	eggNOG-mapper	51369.O64369_9CAUD	sequence-specific DNA binding	NA
UHGV-0106163_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106163_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0106163_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0106163_7	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0106163_7	UniRef90	UniRef90_A0A7Y7UJT5	Phage antirepressor KilAC domain-containing protein	NA
UHGV-0106163_7	eggNOG-mapper	1122147.AUEH01000067_gene277	BRO family, N-terminal domain	NA
UHGV-0106163_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0106163_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0106163_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0106163_7	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0106163_8	PHROG	phrog_16054	NA	unknown function
UHGV-0106163_9	PHROG	phrog_19916	NA	unknown function
UHGV-0106163_10	PHROG	phrog_823	NA	unknown function
UHGV-0106163_10	UniRef90	UniRef90_A0A6L3UM13	NA	NA
UHGV-0106163_10	eggNOG-mapper	543734.LCABL_09630	NA	NA
UHGV-0106163_10	Pfam	PF05595	NA	DUF771
UHGV-0106163_10	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-0106163_11	PHROG	phrog_5205	NA	unknown function
UHGV-0106163_12	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0106163_12	UniRef90	UniRef90_UPI000F780CAF	siphovirus Gp157 family protein	NA
UHGV-0106163_12	eggNOG-mapper	1423816.BACQ01000027_gene967	Siphovirus Gp157	NA
UHGV-0106163_12	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0106163_12	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0106163_13	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106163_13	UniRef90	UniRef90_A8YQL5	Putative NTP-binding protein	NA
UHGV-0106163_13	eggNOG-mapper	1423816.BACQ01000027_gene966	AAA domain	NA
UHGV-0106163_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0106163_13	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-0106163_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-0106163_14	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0106163_14	UniRef90	UniRef90_A8YQL6	Putative single-stranded binding protein	NA
UHGV-0106163_14	eggNOG-mapper	146269.A8YQL6_9CAUD	NA	NA
UHGV-0106163_14	Pfam	PF05037	NA	DUF669
UHGV-0106163_14	Structural annotation	PF05037, NF004948	NA	NA
UHGV-0106163_15	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0106163_15	UniRef90	UniRef90_UPI001157610C	helix-turn-helix domain-containing protein	NA
UHGV-0106163_15	eggNOG-mapper	39103.U5U793_9CAUD	calcium ion binding	NA
UHGV-0106163_15	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0106163_16	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0106163_16	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0106163_16	UniRef90	UniRef90_K6RRD1	Replicative DNA helicase	NA
UHGV-0106163_16	eggNOG-mapper	39103.U5U3Y9_9CAUD	DNA helicase activity	NA
UHGV-0106163_16	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0106163_16	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0106163_17	PHROG	phrog_8182	NA	unknown function
UHGV-0106163_17	UniRef90	UniRef90_A0A0N7IR79	Helicase IV	NA
UHGV-0106163_18	UniRef90	UniRef90_UPI001368B949	helix-turn-helix transcriptional regulator	NA
UHGV-0106163_18	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0106163_19	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0106163_19	UniRef90	UniRef90_A0A179YIE3	NA	NA
UHGV-0106163_19	eggNOG-mapper	279281.Q6J1V2_9CAUD	NA	NA
UHGV-0106163_19	Pfam	PF06356	NA	DUF1064
UHGV-0106163_19	Structural annotation	PF06356, MF_04160, NF033179, COG2887	NA	NA
UHGV-0106163_20	PHROG	phrog_5222	NA	unknown function
UHGV-0106163_20	UniRef90	UniRef90_A0A0E2BXG6	NA	NA
UHGV-0106163_21	PHROG	phrog_7157	NA	unknown function
UHGV-0106163_23	PHROG	phrog_16756	NA	unknown function
UHGV-0106163_24	PHROG	phrog_18228	NA	unknown function
UHGV-0106163_25	PHROG	phrog_15888	NA	unknown function
UHGV-0106163_26	PHROG	phrog_3327	NA	unknown function
UHGV-0106163_26	UniRef90	UniRef90_UPI000914D6D7	NA	NA
UHGV-0106163_26	eggNOG-mapper	568703.LGG_01117	NA	NA
UHGV-0106163_27	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0106163_27	UniRef90	UniRef90_A0A0R1XLA9	Phage N-6-adenine-methyltransferase	NA
UHGV-0106163_27	eggNOG-mapper	525378.HMPREF0793_1859	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0106163_27	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0106163_27	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0106163_27	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0106163_27	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0106163_28	PHROG	phrog_98	NA	unknown function
UHGV-0106163_28	UniRef90	UniRef90_UPI000979A4B4	YopX family protein	NA
UHGV-0106163_28	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-0106163_28	Pfam	PF09643	YopX protein	YopX
UHGV-0106163_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0106163_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0106163_29	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0106163_29	UniRef90	UniRef90_A0A1J3C6U7	Autolysin regulatory protein ArpU	NA
UHGV-0106163_29	eggNOG-mapper	146269.A8YQN1_9CAUD	NA	NA
UHGV-0106163_29	Pfam	PF07374	NA	DUF1492
UHGV-0106163_29	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0106163_29	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0106163_30	PHROG	phrog_15873	NA	unknown function
UHGV-0106163_30	eggNOG-mapper	1423816.BACQ01000027_gene951	NA	NA
UHGV-0106163_31	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106163_31	UniRef90	UniRef90_UPI0019124E64	metallophosphoesterase family protein	NA
UHGV-0106163_31	eggNOG-mapper	146269.A8YQN3_9CAUD	NA	NA
UHGV-0106163_31	Structural annotation	PF12850, MF_00905, NF008359, COG2908	NA	NA
UHGV-0106163_32	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-0106163_32	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-0106163_32	UniRef90	UniRef90_UPI000532E905	ribonucleoside-diphosphate reductase	NA
UHGV-0106163_32	eggNOG-mapper	543734.LCABL_05780	NA	NA
UHGV-0106163_32	Structural annotation	PF13728, MF_01835, NF007657, COG3118	NA	NA
UHGV-0106163_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0106163_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0106163_34	UniRef90	UniRef90_A0A0P0ID78	Small subunit terminase	NA
UHGV-0106163_34	eggNOG-mapper	543734.LCABL_13230	Terminase small subunit	NA
UHGV-0106163_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0106163_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0106163_34	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0106163_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106163_35	PHROG	phrog_10250	NA	unknown function
UHGV-0106163_35	UniRef90	UniRef90_A0A826HMQ6	Terminase_6C domain-containing protein	NA
UHGV-0106163_35	eggNOG-mapper	543734.LCABL_13240	Terminase-like family	NA
UHGV-0106163_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0106163_35	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0106163_35	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106163_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106163_35	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0106163_36	PHROG	phrog_64	portal protein	head and packaging
UHGV-0106163_36	UniRef90	UniRef90_A0A179YKC2	Phage-associated portal protein	NA
UHGV-0106163_36	eggNOG-mapper	568703.LGG_01126	Phage portal protein	NA
UHGV-0106163_36	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0106163_36	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0106163_36	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0106163_37	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0106163_37	UniRef90	UniRef90_A0A0P0I7N0	Phage_Mu_F domain-containing protein	NA
UHGV-0106163_37	eggNOG-mapper	543734.LCABL_13260	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0106163_37	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0106163_37	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0106163_37	COG	COG2369	NA	NA
UHGV-0106163_37	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0106163_39	PHROG	phrog_1233	NA	unknown function
UHGV-0106163_39	UniRef90	UniRef90_Q037D3	NA	NA
UHGV-0106163_39	Structural annotation	PF06114	NA	NA
UHGV-0106163_40	PHROG	phrog_12216	NA	unknown function
UHGV-0106163_41	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0106163_41	UniRef90	UniRef90_A0A179Y7Q2	NA	NA
UHGV-0106163_41	eggNOG-mapper	568703.LGG_01128	NA	NA
UHGV-0106163_41	Pfam	PF14265	NA	DUF4355
UHGV-0106163_41	Structural annotation	PF14265	NA	NA
UHGV-0106163_42	PHROG	phrog_247	major head protein	head and packaging
UHGV-0106163_42	UniRef90	UniRef90_A0A179Y7N7	Capsid protein	NA
UHGV-0106163_42	eggNOG-mapper	568703.LGG_01129	NA	NA
UHGV-0106163_42	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0106163_43	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0106163_43	UniRef90	UniRef90_UPI000235A461	phage head-tail connector protein	NA
UHGV-0106163_43	eggNOG-mapper	568703.LGG_01130	Phage gp6-like head-tail connector protein	NA
UHGV-0106163_43	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0106163_43	Structural annotation	PF05135	NA	NA
UHGV-0106163_44	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0106163_44	UniRef90	UniRef90_A0A179Y7E7	NA	NA
UHGV-0106163_44	eggNOG-mapper	568703.LGG_01131	NA	NA
UHGV-0106163_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0106163_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0106163_45	UniRef90	UniRef90_UPI001F389DB7	phage tail protein	NA
UHGV-0106163_45	eggNOG-mapper	543734.LCABL_13350	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0106163_45	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0106163_46	PHROG	phrog_176	tail terminator	connector
UHGV-0106163_46	UniRef90	UniRef90_Q037E3	Phage major structural protein	NA
UHGV-0106163_46	eggNOG-mapper	543734.LCABL_13360	NA	NA
UHGV-0106163_46	Structural annotation	PF11367	NA	NA
UHGV-0106163_47	PHROG	phrog_238	major tail protein	tail
UHGV-0106163_47	UniRef90	UniRef90_Q037E4	Phage major tail protein	NA
UHGV-0106163_47	eggNOG-mapper	568703.LGG_01134	Phage tail tube protein	NA
UHGV-0106163_47	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0106163_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0106163_48	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0106163_48	UniRef90	UniRef90_A0A179YBW8	NA	NA
UHGV-0106163_48	eggNOG-mapper	568703.LGG_01135	Phage tail assembly chaperone protein, TAC	NA
UHGV-0106163_48	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0106163_48	Structural annotation	PF12363	NA	NA
UHGV-0106163_49	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0106163_49	UniRef90	UniRef90_A0A179YA89	NA	NA
UHGV-0106163_49	eggNOG-mapper	568703.LGG_01136	NA	NA
UHGV-0106163_50	PHROG	phrog_1204	tail protein	tail
UHGV-0106163_50	UniRef90	UniRef90_A0A5R8M1Z7	Tape measure protein	NA
UHGV-0106163_50	eggNOG-mapper	568703.LGG_01137	phage tail tape measure protein	NA
UHGV-0106163_50	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0106163_50	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0106163_50	COG	COG5412	Phage-related protein	NA
UHGV-0106163_50	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0106163_51	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0106163_51	UniRef90	UniRef90_A0A179YA62	Phage tail fiber protein	NA
UHGV-0106163_51	eggNOG-mapper	1423732.BALS01000073_gene2082	Phage tail protein	NA
UHGV-0106163_51	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0106163_51	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0106163_52	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0106163_52	UniRef90	UniRef90_A0A5R8M1T6	Phage tail protein	NA
UHGV-0106163_52	eggNOG-mapper	1423816.BACQ01000026_gene931	cellulase activity	NA
UHGV-0106163_52	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0106163_52	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0106163_52	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0106163_53	PHROG	phrog_4573	NA	unknown function
UHGV-0106163_53	UniRef90	UniRef90_A0A0E2BLW9	Putative phage protein	NA
UHGV-0106163_53	eggNOG-mapper	632112.C1KFN3_9CAUD	NA	NA
UHGV-0106163_53	Structural annotation	PF11192	NA	NA
UHGV-0106163_54	PHROG	phrog_1009	NA	unknown function
UHGV-0106163_54	UniRef90	UniRef90_S2NA97	NA	NA
UHGV-0106163_54	eggNOG-mapper	568703.LGG_01141	NA	NA
UHGV-0106163_55	PHROG	phrog_10091	holin	lysis
UHGV-0106163_55	UniRef90	UniRef90_UPI001F223C42	phage holin	NA
UHGV-0106163_55	eggNOG-mapper	51369.Q9MCC9_9CAUD	Bacteriophage holin	NA
UHGV-0106163_55	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0106163_55	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0106163_55	Structural annotation	PF04531, TIGR01598	NA	NA
UHGV-0106163_56	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0106163_56	PHROG	phrog_3393	endolysin	lysis
UHGV-0106163_56	UniRef90	UniRef90_Q9MCC8	Lysin	NA
UHGV-0106163_56	eggNOG-mapper	39103.U5U408_9CAUD	peptidoglycan catabolic process	NA
UHGV-0106163_56	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0106163_56	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0106163_57	KOfam	K07341	doc; death on curing protein	NA
UHGV-0106163_57	PHROG	phrog_26655	NA	unknown function
UHGV-0106163_57	UniRef90	UniRef90_A0A7M1BYV5	Fido domain-containing protein	NA
UHGV-0106163_57	eggNOG-mapper	349123.Lreu23DRAFT_3974	NA	NA
UHGV-0106163_57	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0106163_57	COG	COG3654	Prophage maintenance system killer protein	NA
UHGV-0106163_60	PHROG	phrog_12732	NA	unknown function
UHGV-0106163_60	UniRef90	UniRef90_O03943	Rorf148 protein	NA
UHGV-0106163_60	AcrCatalog	cluster_25206	NA	NA