UHGV-0106203

Genome information

Genome length 32,886 bps

CDS count 58

Completeness 93.28% (high-quality)

geNomad score 0.9712

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106203
vOTU ID	vOTU-063455
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_243332
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.28% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9712
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.68
Jumbo phage	No

Genome content
Genome length	32,886 bps
GC content	27.38%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.04%
Average CDS length	511.60 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106203_4	PHROG	phrog_18955	NA	unknown function
UHGV-0106203_4	UniRef90	UniRef90_R7FGU9	Peptidoglycan-binding domain 1 protein	NA
UHGV-0106203_4	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0106203_4	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0106203_4	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0106203_4	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0106203_4	Structural annotation	PF03412, PF08239, PF18341, NF040678, NF033920, COG4991, COG4990	NA	NA
UHGV-0106203_5	eggNOG-mapper	1235793.C809_03303	NA	NA
UHGV-0106203_7	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0106203_7	Structural annotation	TIGR03711	NA	NA
UHGV-0106203_9	Pfam	PF00404	Dockerin type I domain	Dockerin_1
UHGV-0106203_10	Structural annotation	PF20747	NA	NA
UHGV-0106203_11	PHROG	phrog_7064	tail protein	tail
UHGV-0106203_11	Structural annotation	PF14594, NF033848, COG4926	NA	NA
UHGV-0106203_12	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-0106203_12	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0106203_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0106203_13	UniRef90	UniRef90_A0A1E3BXP9	Phage tail protein	NA
UHGV-0106203_13	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0106203_13	COG	COG5412	Phage-related protein	NA
UHGV-0106203_13	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0106203_14	UniRef90	UniRef90_A0A845QNE6	Com family DNA-binding transcriptional regulator	NA
UHGV-0106203_14	eggNOG-mapper	1540257.JQMW01000013_gene732	Mu-like prophage protein Com	NA
UHGV-0106203_14	Structural annotation	PF01667, MF_00371, TIGR02098, COG2051	NA	NA
UHGV-0106203_15	PHROG	phrog_2115	tail protein	tail
UHGV-0106203_15	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0106203_15	Structural annotation	PF11836	NA	NA
UHGV-0106203_16	PHROG	phrog_88	major tail protein	tail
UHGV-0106203_16	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0106203_16	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0106203_16	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0106203_16	COG	COG5492	NA	NA
UHGV-0106203_16	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0106203_17	PHROG	phrog_78	tail terminator	connector
UHGV-0106203_17	Structural annotation	PF05657	NA	NA
UHGV-0106203_18	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0106203_18	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0106203_18	Structural annotation	TIGR01725	NA	NA
UHGV-0106203_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0106203_19	UniRef90	UniRef90_F8J165	Putative head-tail adaptor	NA
UHGV-0106203_19	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0106203_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0106203_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0106203_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0106203_20	UniRef90	UniRef90_A0A371AT65	Phage gp6-like head-tail connector protein	NA
UHGV-0106203_20	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0106203_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0106203_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0106203_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0106203_21	UniRef90	UniRef90_A0A168E1E5	Phage capsid family protein	NA
UHGV-0106203_21	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0106203_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0106203_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0106203_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0106203_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0106203_22	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0106203_22	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0106203_22	UniRef90	UniRef90_A0A1Q6M1U6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0106203_22	eggNOG-mapper	536232.CLM_2055	Belongs to the peptidase S14 family	NA
UHGV-0106203_22	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0106203_22	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0106203_22	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0106203_23	PHROG	phrog_12	portal protein	head and packaging
UHGV-0106203_23	UniRef90	UniRef90_A0A1Q6M1W2	Phage portal protein	NA
UHGV-0106203_23	eggNOG-mapper	508419.F8J160_9CAUD	Phage portal protein	NA
UHGV-0106203_23	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0106203_23	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0106203_23	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0106203_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0106203_24	UniRef90	UniRef90_A0A1Q6M1W9	Terminase	NA
UHGV-0106203_24	eggNOG-mapper	397288.C806_00076	Phage Terminase	NA
UHGV-0106203_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0106203_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0106203_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0106203_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0106203_25	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0106203_25	eggNOG-mapper	1414720.CBYM010000002_gene576	NA	NA
UHGV-0106203_25	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0106203_26	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106203_26	UniRef90	UniRef90_A0A1Q6M1V2	HNHc domain-containing protein	NA
UHGV-0106203_26	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-0106203_28	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0106203_30	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0106203_43	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0106203_43	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0106203_43	AcrCatalog	cluster_47493	NA	NA
UHGV-0106203_43	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0106203_44	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0106203_48	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0106203_48	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0106203_48	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0106203_48	eggNOG-mapper	123214.PERMA_1295	Participates in initiation and elongation during chromosome replication	NA
UHGV-0106203_48	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0106203_48	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0106203_48	COG	COG0305	Replicative DNA helicase	NA
UHGV-0106203_48	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0106203_49	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0106203_49	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0106203_49	UniRef90	UniRef90_A0A511IU51	Replication protein DnaD	NA
UHGV-0106203_49	eggNOG-mapper	218284.CCDN010000001_gene839	Helix-turn-helix domain	NA
UHGV-0106203_49	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0106203_49	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0106203_49	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0106203_49	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0106203_49	Structural annotation	PF13730, NF040939, COG3355	NA	NA
UHGV-0106203_50	PHROG	phrog_7566	NA	unknown function
UHGV-0106203_52	PHROG	phrog_9607	NA	unknown function
UHGV-0106203_52	Structural annotation	PF02883, MF_00791, NF012200, COG3354	NA	NA
UHGV-0106203_55	UniRef90	UniRef90_A0A1Q6M287	Excisionase	NA
UHGV-0106203_55	eggNOG-mapper	1029718.SFBM_0098	Helix-turn-helix domain	NA
UHGV-0106203_55	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0106203_55	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0106203_55	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0106203_58	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0106203_58	UniRef90	UniRef90_A0A1Q6LE94	HTH cro/C1-type domain-containing protein	NA
UHGV-0106203_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106203_58	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0106203_58	Structural annotation	PF01381, NF041951, COG1476	NA	NA