UHGV-0106286

Genome information

Genome length 37,277 bps

CDS count 54

Completeness 97.06% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106286
vOTU ID	vOTU-076731
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255137
BioSample	SAMEA3708734
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.06% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.62
Jumbo phage	No

Genome content
Genome length	37,277 bps
GC content	43.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	94.57%
Average CDS length	658.28 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106286_1	KOfam	K07496	K07496; putative transposase	NA
UHGV-0106286_1	PHROG	phrog_506	transposase	integration and excision
UHGV-0106286_1	UniRef90	UniRef90_A0A6L8T2K7	IS200/IS605 family element transposase accessory protein TnpB	NA
UHGV-0106286_1	eggNOG-mapper	457412.RSAG_04582	transposase, IS605 OrfB family	NA
UHGV-0106286_1	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-0106286_1	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-0106286_1	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-0106286_1	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-0106286_1	COG	COG0675	Transposase	NA
UHGV-0106286_1	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-0106286_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0106286_2	PHROG	phrog_670	endolysin	lysis
UHGV-0106286_2	UniRef90	UniRef90_UPI000E432ED8	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0106286_2	eggNOG-mapper	411459.RUMOBE_00909	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0106286_2	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0106286_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0106286_2	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0106286_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0106286_2	Structural annotation	PF01832, NF008758, NF009354, COG5632, COG4193	NA	NA
UHGV-0106286_3	PHROG	phrog_1129	holin	lysis
UHGV-0106286_3	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0106286_3	eggNOG-mapper	1121115.AXVN01000006_gene2171	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0106286_3	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0106286_3	Structural annotation	PF16079	NA	NA
UHGV-0106286_4	PHROG	phrog_4105	NA	unknown function
UHGV-0106286_4	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0106286_5	eggNOG-mapper	457412.RSAG_04673	NA	NA
UHGV-0106286_8	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0106286_8	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0106286_8	UniRef90	UniRef90_A0A3C1LSM0	Reverse transcriptase domain-containing protein	NA
UHGV-0106286_8	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0106286_8	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0106286_8	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0106286_8	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0106286_9	PHROG	phrog_3206	Avd protein of DGR	DNA, RNA and nucleotide metabolism
UHGV-0106286_9	eggNOG-mapper	525254.HMPREF0072_1280	NA	NA
UHGV-0106286_9	Structural annotation	PF05635, MF_04067, NF008911	NA	NA
UHGV-0106286_10	PHROG	phrog_19280	NA	unknown function
UHGV-0106286_10	UniRef90	UniRef90_A0A1C5MAK6	NA	NA
UHGV-0106286_10	eggNOG-mapper	1123075.AUDP01000020_gene1527	NA	NA
UHGV-0106286_10	Pfam	PF19789	NA	DUF6273
UHGV-0106286_12	PHROG	phrog_18444	NA	unknown function
UHGV-0106286_12	UniRef90	UniRef90_UPI00156E9A45	peptide chain release factor 2	NA
UHGV-0106286_13	PHROG	phrog_9886	NA	unknown function
UHGV-0106286_13	UniRef90	UniRef90_A0A417PG56	Peptidase S74 domain-containing protein	NA
UHGV-0106286_13	eggNOG-mapper	1123075.AUDP01000020_gene1524	Prophage endopeptidase tail	NA
UHGV-0106286_13	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0106286_13	COG	COG4926	Phage-related protein	NA
UHGV-0106286_13	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0106286_14	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0106286_14	UniRef90	UniRef90_A0A1M6MWV9	Phage tail protein	NA
UHGV-0106286_14	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0106286_14	COG	COG4722	Phage-related protein YomH	NA
UHGV-0106286_14	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0106286_15	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0106286_15	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0106286_15	UniRef90	UniRef90_A0A417PG60	Phage tail tape measure protein	NA
UHGV-0106286_15	eggNOG-mapper	397288.C806_05080	Phage-related minor tail protein	NA
UHGV-0106286_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0106286_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0106286_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0106286_15	Structural annotation	PF10145, COG5280	NA	NA
UHGV-0106286_16	PHROG	phrog_3033	NA	unknown function
UHGV-0106286_16	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0106286_16	eggNOG-mapper	1235799.C818_01010	NA	NA
UHGV-0106286_17	PHROG	phrog_709	NA	unknown function
UHGV-0106286_17	eggNOG-mapper	610130.Closa_0750	NA	NA
UHGV-0106286_17	Structural annotation	PF11836	NA	NA
UHGV-0106286_18	PHROG	phrog_88	major tail protein	tail
UHGV-0106286_18	UniRef90	UniRef90_A0A417ANR0	Phage tail protein	NA
UHGV-0106286_18	eggNOG-mapper	411490.ANACAC_00732	phage major tail protein, phi13 family	NA
UHGV-0106286_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0106286_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0106286_19	PHROG	phrog_78	tail terminator	connector
UHGV-0106286_19	eggNOG-mapper	610130.Closa_0748	NA	NA
UHGV-0106286_19	Structural annotation	PF20765	NA	NA
UHGV-0106286_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0106286_20	UniRef90	UniRef90_A0A417PG70	HK97 gp10 family phage protein	NA
UHGV-0106286_20	eggNOG-mapper	397287.C807_04036	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0106286_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0106286_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0106286_21	eggNOG-mapper	1235792.C808_00088	NA	NA
UHGV-0106286_21	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0106286_22	PHROG	phrog_749	NA	unknown function
UHGV-0106286_22	eggNOG-mapper	1235792.C808_00087	NA	NA
UHGV-0106286_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0106286_23	UniRef90	UniRef90_A0A417PG62	Phage major capsid protein	NA
UHGV-0106286_23	eggNOG-mapper	1235792.C808_00086	Phage capsid family	NA
UHGV-0106286_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0106286_23	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0106286_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0106286_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0106286_23	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0106286_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0106286_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0106286_24	UniRef90	UniRef90_A0A417PG92	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0106286_24	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0106286_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0106286_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0106286_24	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0106286_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0106286_25	UniRef90	UniRef90_A0A417PG64	Phage portal protein	NA
UHGV-0106286_25	eggNOG-mapper	1235792.C808_00084	Phage portal protein, HK97 family	NA
UHGV-0106286_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0106286_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0106286_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0106286_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0106286_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0106286_26	UniRef90	UniRef90_A0A417PG72	Terminase large subunit	NA
UHGV-0106286_26	eggNOG-mapper	1235792.C808_00083	Phage terminase-like protein large subunit	NA
UHGV-0106286_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0106286_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0106286_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0106286_26	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0106286_27	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0106286_27	UniRef90	UniRef90_A0A1M6MVK9	Phage terminase, small subunit	NA
UHGV-0106286_27	eggNOG-mapper	1235792.C808_00082	NA	NA
UHGV-0106286_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0106286_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0106286_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106286_28	UniRef90	UniRef90_A0A417PG49	NA	NA
UHGV-0106286_28	eggNOG-mapper	1235792.C808_00081	HNH nucleases	NA
UHGV-0106286_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0106286_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0106286_29	PHROG	phrog_1315	NA	unknown function
UHGV-0106286_30	PHROG	phrog_11237	NA	unknown function
UHGV-0106286_30	eggNOG-mapper	1235798.C817_02584	NA	NA
UHGV-0106286_31	PHROG	phrog_6072	NA	unknown function
UHGV-0106286_32	PHROG	phrog_7566	NA	unknown function
UHGV-0106286_32	eggNOG-mapper	411459.RUMOBE_00948	NA	NA
UHGV-0106286_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0106286_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0106286_34	UniRef90	UniRef90_A0A417ANN0	Single-stranded DNA-binding protein	NA
UHGV-0106286_34	eggNOG-mapper	457412.RSAG_03244	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0106286_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0106286_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0106286_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0106286_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0106286_34	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0106286_35	UniRef90	UniRef90_A0A417ANR7	LexA_DNA_bind domain-containing protein	NA
UHGV-0106286_35	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0106286_35	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0106286_35	Structural annotation	PF01726, MF_00732, TIGR00738, COG3388	NA	NA
UHGV-0106286_39	UniRef90	UniRef90_A0A1Q6JLU8	PH domain-containing protein	NA
UHGV-0106286_39	eggNOG-mapper	411470.RUMGNA_00212	NA	NA
UHGV-0106286_41	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0106286_41	PHROG	phrog_15077	NA	unknown function
UHGV-0106286_41	UniRef90	UniRef90_A0A1C5VK28	ParB-like nuclease domain	NA
UHGV-0106286_41	eggNOG-mapper	1235792.C808_00610	ParB-like nuclease domain	NA
UHGV-0106286_41	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0106286_41	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0106286_41	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0106286_42	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0106286_42	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0106286_42	UniRef90	UniRef90_A0A417PG63	ParA family protein	NA
UHGV-0106286_42	eggNOG-mapper	97139.C824_00725	Cellulose biosynthesis protein BcsQ	NA
UHGV-0106286_42	Pfam	PF13614	AAA domain	AAA_31
UHGV-0106286_42	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0106286_42	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0106286_44	UniRef90	UniRef90_A0A1C6IUE3	Ribonuclease H	NA
UHGV-0106286_44	eggNOG-mapper	411461.DORFOR_01140	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0106286_44	COG	COG0328	Ribonuclease HI	NA
UHGV-0106286_44	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0106286_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0106286_45	eggNOG-mapper	1235792.C808_03084	NA	NA
UHGV-0106286_45	Structural annotation	PF01446	NA	NA
UHGV-0106286_48	eggNOG-mapper	1235792.C808_00637	NA	NA
UHGV-0106286_50	PHROG	phrog_750	NA	unknown function
UHGV-0106286_50	eggNOG-mapper	742723.HMPREF9477_00931	NA	NA
UHGV-0106286_50	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0106286_51	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0106286_51	UniRef90	UniRef90_UPI00156E233F	NA	NA
UHGV-0106286_51	eggNOG-mapper	226185.EF_2851	NA	NA
UHGV-0106286_51	Pfam	PF11195	NA	DUF2829
UHGV-0106286_51	Structural annotation	PF11195	NA	NA
UHGV-0106286_54	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0106286_54	UniRef90	UniRef90_A0A417ANN6	XRE family transcriptional regulator	NA
UHGV-0106286_54	eggNOG-mapper	742740.HMPREF9474_04328	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106286_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106286_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106286_54	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA