UHGV-0106300

Genome information

Genome length 32,572 bps

CDS count 49

Completeness 93.50% (high-quality)

geNomad score 0.9652

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106300
vOTU ID	vOTU-067643
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_247199
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9652
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	1
viralVerify prediction	Virus
viralVerify score	22.99
Jumbo phage	No

Genome content
Genome length	32,572 bps
GC content	54.99%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	91.19%
Average CDS length	608.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106300_1	eggNOG-mapper	1122917.KB899673_gene660	NA	NA
UHGV-0106300_2	PHROG	phrog_6616	tail protein	tail
UHGV-0106300_2	Structural annotation	PF13550, PF16466, NF033848, COG3500	NA	NA
UHGV-0106300_3	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0106300_4	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0106300_4	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0106300_4	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0106300_4	COG	COG1511	NA	NA
UHGV-0106300_4	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0106300_5	PHROG	phrog_706	NA	unknown function
UHGV-0106300_5	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0106300_5	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0106300_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0106300_5	Structural annotation	PF06854	NA	NA
UHGV-0106300_6	PHROG	phrog_11299	NA	unknown function
UHGV-0106300_6	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0106300_6	Structural annotation	PF10666	NA	NA
UHGV-0106300_7	PHROG	phrog_3099	NA	unknown function
UHGV-0106300_7	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0106300_7	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0106300_8	PHROG	phrog_3266	tail completion	connector
UHGV-0106300_8	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0106300_8	Structural annotation	PF12691	NA	NA
UHGV-0106300_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0106300_9	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0106300_9	eggNOG-mapper	33035.JPJF01000106_gene3128	NA	NA
UHGV-0106300_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0106300_9	Structural annotation	PF11114	NA	NA
UHGV-0106300_10	PHROG	phrog_3366	NA	unknown function
UHGV-0106300_10	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-0106300_11	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0106300_11	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0106300_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-0106300_12	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0106300_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0106300_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0106300_13	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0106300_13	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0106300_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0106300_13	Structural annotation	PF06810	NA	NA
UHGV-0106300_14	UniRef90	UniRef90_UPI000C08D045	NA	NA
UHGV-0106300_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0106300_15	UniRef90	UniRef90_A0A3D4T830	Phage capsid protein	NA
UHGV-0106300_15	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0106300_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0106300_15	Pfam	PF21814	NA	DUF6883
UHGV-0106300_15	COG	COG2369	NA	NA
UHGV-0106300_15	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0106300_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0106300_16	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0106300_16	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0106300_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0106300_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106300_17	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0106300_17	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0106300_17	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0106300_17	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0106300_17	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0106300_17	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0106300_17	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106300_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106300_17	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0106300_18	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0106300_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0106300_19	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0106300_19	Pfam	PF07374	NA	DUF1492
UHGV-0106300_19	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0106300_20	PHROG	phrog_3136	NA	unknown function
UHGV-0106300_20	UniRef90	UniRef90_UPI001C26B029	ASCH domain-containing protein	NA
UHGV-0106300_20	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0106300_20	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0106300_20	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0106300_21	PHROG	phrog_5781	NA	unknown function
UHGV-0106300_21	UniRef90	UniRef90_A0A1C6JA96	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0106300_21	eggNOG-mapper	1048834.TC41_1868	NA	NA
UHGV-0106300_21	Pfam	PF14359	NA	DUF4406
UHGV-0106300_21	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0106300_22	PHROG	phrog_1029	NA	unknown function
UHGV-0106300_22	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0106300_22	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0106300_23	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0106300_23	UniRef90	UniRef90_R6MCS9	NA	NA
UHGV-0106300_23	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0106300_24	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0106300_24	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0106300_24	UniRef90	UniRef90_R9MCP5	DNA adenine methylase	NA
UHGV-0106300_24	eggNOG-mapper	1235799.C818_02654	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0106300_24	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0106300_24	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0106300_24	COG	COG0338	DNA-adenine methylase	NA
UHGV-0106300_24	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0106300_25	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0106300_26	KOfam	K03700	recU; recombination protein U	NA
UHGV-0106300_26	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0106300_26	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0106300_26	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0106300_26	Pfam	PF03838	Recombination protein U	RecU
UHGV-0106300_26	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0106300_26	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0106300_27	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0106300_27	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0106300_27	Structural annotation	PF21578	NA	NA
UHGV-0106300_30	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0106300_30	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0106300_30	UniRef90	UniRef90_UPI0018F33479	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0106300_30	eggNOG-mapper	268407.PWYN_12320	AbrB family transcriptional regulator	NA
UHGV-0106300_30	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0106300_30	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0106300_30	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0106300_30	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0106300_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0106300_36	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0106300_36	UniRef90	UniRef90_A0A174LY22	Antitoxin PezA	NA
UHGV-0106300_36	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0106300_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106300_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106300_36	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0106300_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0106300_38	UniRef90	UniRef90_R5AVU4	CI-like repressor	NA
UHGV-0106300_38	eggNOG-mapper	1120971.AUCA01000073_gene2914	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0106300_38	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0106300_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0106300_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0106300_39	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0106300_39	PHROG	phrog_19856	NA	unknown function
UHGV-0106300_39	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0106300_39	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0106300_39	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0106300_39	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0106300_40	Structural annotation	PF21227	NA	NA
UHGV-0106300_41	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-0106300_42	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0106300_42	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0106300_42	UniRef90	UniRef90_UPI00051ABD2F	helix-turn-helix domain-containing protein	NA
UHGV-0106300_42	eggNOG-mapper	1280688.AUJB01000009_gene1936	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106300_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106300_42	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0106300_43	Structural annotation	PF11950, NF008958	NA	NA
UHGV-0106300_44	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0106300_44	UniRef90	UniRef90_E2ZI86	Abi-like protein	NA
UHGV-0106300_44	eggNOG-mapper	748224.HMPREF9436_01377	Abi-like protein	NA
UHGV-0106300_44	PADLOC	AbiD	AbiD	Abi
UHGV-0106300_44	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0106300_44	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0106300_44	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0106300_45	PHROG	phrog_33519	NA	unknown function
UHGV-0106300_45	eggNOG-mapper	97139.C824_02721	NA	NA
UHGV-0106300_45	Structural annotation	PF13958, NF010262, COG2337	NA	NA
UHGV-0106300_46	KOfam	K14059	int; integrase	NA
UHGV-0106300_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0106300_46	UniRef90	UniRef90_UPI001958A27A	site-specific integrase	NA
UHGV-0106300_46	eggNOG-mapper	1203606.HMPREF1526_00215	Phage integrase family	NA
UHGV-0106300_46	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0106300_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106300_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0106300_46	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0106300_47	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0106300_47	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106300_47	UniRef90	UniRef90_R5AWG7	Putative endonuclease	NA
UHGV-0106300_47	eggNOG-mapper	742738.HMPREF9460_04035	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0106300_47	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0106300_47	COG	COG4748	NA	NA
UHGV-0106300_47	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0106300_48	KOfam	K02510	hpaI, hpcH; 4-hydroxy-2-oxoheptanedioate aldolase [EC:4.1.2.52]	NA
UHGV-0106300_48	UniRef90	UniRef90_R5B8D9	HpcH_HpaI domain-containing protein	NA
UHGV-0106300_48	eggNOG-mapper	1121324.CLIT_10c01820	Belongs to the HpcH HpaI aldolase family	NA
UHGV-0106300_48	Pfam	PF03328	HpcH/HpaI aldolase/citrate lyase family	HpcH_HpaI
UHGV-0106300_48	COG	COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	NA
UHGV-0106300_49	UniRef90	UniRef90_UPI0019568B57	ribbon-helix-helix protein, CopG family	NA
UHGV-0106300_49	eggNOG-mapper	877411.JMMA01000002_gene1754	Ribbon-helix-helix protein, copG family	NA
UHGV-0106300_49	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1