UHGV-0106302

Genome information

Genome length 31,696 bps

CDS count 46

Completeness 90.09% (high-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106302
vOTU ID	vOTU-067645
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_247201
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.6
Jumbo phage	No

Genome content
Genome length	31,696 bps
GC content	39.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.68%
Average CDS length	634.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106302_1	eggNOG-mapper	742740.HMPREF9474_02251	Putative phage holin Dp-1	NA
UHGV-0106302_1	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0106302_2	PHROG	phrog_1009	NA	unknown function
UHGV-0106302_2	UniRef90	UniRef90_A0A373XMY3	Branched-chain amino acid ABC transporter permease	NA
UHGV-0106302_2	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0106302_4	PHROG	phrog_5302	tail protein	tail
UHGV-0106302_4	UniRef90	UniRef90_A0A373XLZ6	NA	NA
UHGV-0106302_4	eggNOG-mapper	742740.HMPREF9474_02337	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0106302_4	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0106302_4	Structural annotation	PF10651, NF040788	NA	NA
UHGV-0106302_5	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0106302_5	UniRef90	UniRef90_A0A348ZBV6	Prophage_tail domain-containing protein	NA
UHGV-0106302_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0106302_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0106302_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0106302_6	UniRef90	UniRef90_A0A1G5CPA2	Phage-related protein	NA
UHGV-0106302_6	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0106302_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0106302_6	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0106302_7	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0106302_7	PHROG	phrog_5218	NA	unknown function
UHGV-0106302_7	UniRef90	UniRef90_A0A412ULX0	PhageMin_Tail domain-containing protein	NA
UHGV-0106302_7	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0106302_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0106302_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0106302_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0106302_8	Structural annotation	PF11836	NA	NA
UHGV-0106302_9	PHROG	phrog_88	major tail protein	tail
UHGV-0106302_9	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0106302_9	eggNOG-mapper	1321782.HMPREF1986_01362	phage major tail protein, phi13 family	NA
UHGV-0106302_9	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0106302_9	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0106302_10	UniRef90	UniRef90_UPI000E5564A4	HK97 gp10 family phage protein	NA
UHGV-0106302_10	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0106302_10	Structural annotation	TIGR01725	NA	NA
UHGV-0106302_11	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0106302_12	PHROG	phrog_19734	NA	unknown function
UHGV-0106302_12	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0106302_12	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0106302_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0106302_13	PHROG	phrog_749	NA	unknown function
UHGV-0106302_13	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0106302_13	eggNOG-mapper	1211817.CCAT010000053_gene2133	NA	NA
UHGV-0106302_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0106302_14	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0106302_14	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0106302_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0106302_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0106302_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0106302_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0106302_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0106302_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0106302_15	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0106302_15	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0106302_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0106302_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0106302_15	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0106302_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0106302_16	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0106302_16	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0106302_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0106302_16	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0106302_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0106302_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0106302_17	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0106302_17	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0106302_17	UniRef90	UniRef90_A0A7X8ML29	Methyltransferase	NA
UHGV-0106302_17	eggNOG-mapper	755731.Clo1100_1145	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0106302_17	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0106302_17	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0106302_17	COG	COG0863	DNA modification methylase	NA
UHGV-0106302_17	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0106302_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0106302_18	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0106302_18	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0106302_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0106302_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0106302_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0106302_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0106302_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0106302_19	UniRef90	UniRef90_A0A4U7JDP0	P27 family phage terminase small subunit	NA
UHGV-0106302_19	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0106302_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0106302_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0106302_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106302_20	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0106302_20	eggNOG-mapper	1158607.UAU_01026	HNH endonuclease	NA
UHGV-0106302_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0106302_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0106302_21	Structural annotation	TIGR01636	NA	NA
UHGV-0106302_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0106302_22	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0106302_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0106302_26	UniRef90	UniRef90_UPI000E4DC4DA	helix-turn-helix domain-containing protein	NA
UHGV-0106302_26	Structural annotation	PF15597	NA	NA
UHGV-0106302_27	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106302_27	UniRef90	UniRef90_A0A374DVG7	HNH endonuclease	NA
UHGV-0106302_27	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0106302_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0106302_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0106302_27	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0106302_29	PHROG	phrog_824	NA	unknown function
UHGV-0106302_29	UniRef90	UniRef90_A0A3D3D6C6	VRR-NUC domain-containing protein	NA
UHGV-0106302_29	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0106302_29	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0106302_29	Structural annotation	PF08774	NA	NA
UHGV-0106302_30	PHROG	phrog_24518	NA	unknown function
UHGV-0106302_30	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0106302_32	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0106302_32	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0106302_32	UniRef90	UniRef90_UPI000E47CAB6	ParB/RepB/Spo0J family partition protein	NA
UHGV-0106302_32	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0106302_32	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0106302_32	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0106302_32	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0106302_32	Structural annotation	PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0106302_36	PHROG	phrog_6058	NA	unknown function
UHGV-0106302_36	Structural annotation	NF033787	NA	NA
UHGV-0106302_37	PHROG	phrog_8684	NA	unknown function
UHGV-0106302_37	UniRef90	UniRef90_UPI000E48855B	YopX family protein	NA
UHGV-0106302_37	eggNOG-mapper	1458852.A0A059T7V5_9CAUD	YopX protein	NA
UHGV-0106302_37	Pfam	PF09643	YopX protein	YopX
UHGV-0106302_37	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0106302_39	PHROG	phrog_585	NA	unknown function
UHGV-0106302_39	UniRef90	UniRef90_UPI00051C896C	NA	NA
UHGV-0106302_39	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0106302_39	Pfam	PF10711	NA	DUF2513
UHGV-0106302_39	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0106302_41	UniRef90	UniRef90_UPI001897B0FF	helix-turn-helix transcriptional regulator	NA
UHGV-0106302_41	eggNOG-mapper	1121289.JHVL01000079_gene1187	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106302_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106302_41	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0106302_42	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0106302_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106302_42	UniRef90	UniRef90_UPI0015F3DE1D	helix-turn-helix domain-containing protein	NA
UHGV-0106302_42	eggNOG-mapper	272562.CA_C1559	sequence-specific DNA binding	NA
UHGV-0106302_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106302_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0106302_42	Structural annotation	PF05339, NF007257, COG3655	NA	NA
UHGV-0106302_43	PHROG	phrog_1914	NA	unknown function
UHGV-0106302_43	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0106302_43	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0106302_43	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0106302_43	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0106302_43	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0106302_45	eggNOG-mapper	1232447.BAHW02000014_gene830	NA	NA
UHGV-0106302_46	KOfam	K14059	int; integrase	NA
UHGV-0106302_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0106302_46	UniRef90	UniRef90_A0A1G5CL52	Phage integrase family protein	NA
UHGV-0106302_46	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0106302_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106302_46	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0106302_46	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA