UHGV-0106381

Genome information

Genome length 37,431 bps

CDS count 58

Completeness 60.40% (medium-quality)

geNomad score 0.9659

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106381
vOTU ID	vOTU-027139
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250462
BioSample	SAMEA3708743
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	25
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9659
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.24
Jumbo phage	No

Genome content
Genome length	37,431 bps
GC content	31.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	94.43%
Average CDS length	612.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106381_1	eggNOG-mapper	1122217.KB899580_gene1660	Haem-binding uptake, Tiki superfamily, ChaN	NA
UHGV-0106381_1	COG	COG3016	Putative heme-binding protein PhuW	NA
UHGV-0106381_2	KOfam	K14059	int; integrase	NA
UHGV-0106381_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0106381_2	UniRef90	UniRef90_A0A378NT19	Site-specific tyrosine recombinase XerC	NA
UHGV-0106381_2	eggNOG-mapper	1589749.A0A0B5A7B7_9CAUD	Phage integrase family	NA
UHGV-0106381_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0106381_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0106381_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106381_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0106381_3	PHROG	phrog_10777	NA	unknown function
UHGV-0106381_3	UniRef90	UniRef90_H3K6B4	SAP domain-containing protein	NA
UHGV-0106381_3	eggNOG-mapper	1408254.T458_02640	Staphylococcal nuclease homologues	NA
UHGV-0106381_3	Pfam	PF02037	SAP domain	SAP
UHGV-0106381_3	COG	COG1525	Endonuclease YncB, thermonuclease family	NA
UHGV-0106381_4	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0106381_4	UniRef90	UniRef90_A0A134CH41	Beta-lactamase inhibitor	NA
UHGV-0106381_4	eggNOG-mapper	1232428.CAVO010000021_gene822	NA	NA
UHGV-0106381_4	Pfam	PF12978	NA	DUF3862
UHGV-0106381_4	Structural annotation	PF12978	NA	NA
UHGV-0106381_5	PHROG	phrog_4915	NA	unknown function
UHGV-0106381_5	UniRef90	UniRef90_UPI001BC95561	NA	NA
UHGV-0106381_5	eggNOG-mapper	1385510.N781_16090	NA	NA
UHGV-0106381_6	PHROG	phrog_87	metallo-protease	other
UHGV-0106381_6	UniRef90	UniRef90_A0A378NT22	Metallopeptidase immA	NA
UHGV-0106381_6	eggNOG-mapper	679201.HMPREF9334_00293	IrrE N-terminal-like domain	NA
UHGV-0106381_6	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0106381_6	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0106381_6	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0106381_7	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0106381_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106381_7	UniRef90	UniRef90_A0A378NT18	Transcriptional repressor DicA	NA
UHGV-0106381_7	eggNOG-mapper	1120985.AUMI01000019_gene2260	sequence-specific DNA binding	NA
UHGV-0106381_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106381_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106381_7	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0106381_8	UniRef90	UniRef90_A0A5D6WEV6	Helix-turn-helix transcriptional regulator	NA
UHGV-0106381_8	eggNOG-mapper	1009370.ALO_12841	NA	NA
UHGV-0106381_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106381_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0106381_9	PHROG	phrog_33611	NA	unknown function
UHGV-0106381_9	eggNOG-mapper	1226322.HMPREF1545_03511	NA	NA
UHGV-0106381_10	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0106381_10	UniRef90	UniRef90_H3K6A6	HTH cro/C1-type domain-containing protein	NA
UHGV-0106381_10	eggNOG-mapper	246194.CHY_1694	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106381_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106381_10	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0106381_10	Structural annotation	PF13560, MF_00535, TIGR03070, COG1476	NA	NA
UHGV-0106381_15	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106381_15	UniRef90	UniRef90_UPI0018C46309	ATP-binding protein	NA
UHGV-0106381_15	eggNOG-mapper	445972.ANACOL_00146	AAA domain	NA
UHGV-0106381_15	Pfam	PF13479	AAA domain	AAA_24
UHGV-0106381_15	COG	COG1100	GTPase SAR1 family domain	NA
UHGV-0106381_15	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0106381_16	UniRef90	UniRef90_A0A2Z4QA33	PD-(D/E)XK nuclease	NA
UHGV-0106381_16	eggNOG-mapper	718252.FP2_01050	NA	NA
UHGV-0106381_16	Structural annotation	PF10926, MF_03030, TIGR04328, COG4343	NA	NA
UHGV-0106381_17	PHROG	phrog_398	NA	unknown function
UHGV-0106381_17	UniRef90	UniRef90_UPI0018C6CD3B	putative HNHc nuclease	NA
UHGV-0106381_17	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0106381_17	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0106381_17	Structural annotation	PF16784	NA	NA
UHGV-0106381_18	PHROG	phrog_9403	NA	unknown function
UHGV-0106381_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0106381_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0106381_20	UniRef90	UniRef90_A0A1H8EJI9	DNA replication protein DnaC	NA
UHGV-0106381_20	eggNOG-mapper	546271.Selsp_1349	Primosomal protein DnaI	NA
UHGV-0106381_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0106381_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0106381_20	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0106381_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0106381_24	UniRef90	UniRef90_A0A412CG73	NA	NA
UHGV-0106381_24	eggNOG-mapper	169963.lmo2306	NA	NA
UHGV-0106381_24	Pfam	PF06356	NA	DUF1064
UHGV-0106381_25	PHROG	phrog_8684	NA	unknown function
UHGV-0106381_25	UniRef90	UniRef90_H3K6U3	YopX domain-containing protein	NA
UHGV-0106381_25	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0106381_25	Pfam	PF09643	YopX protein	YopX
UHGV-0106381_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0106381_29	UniRef90	UniRef90_UPI00195D58A8	NA	NA
UHGV-0106381_29	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0106381_30	Pfam	PF18928	NA	DUF5677
UHGV-0106381_31	PHROG	phrog_12517	NA	unknown function
UHGV-0106381_31	UniRef90	UniRef90_A0A7X8DEM7	N6_N4_Mtase domain-containing protein	NA
UHGV-0106381_31	eggNOG-mapper	794903.OPIT5_03875	N-4 methylation of cytosine	NA
UHGV-0106381_31	COG	COG0863	DNA modification methylase	NA
UHGV-0106381_32	PHROG	phrog_10302	NA	unknown function
UHGV-0106381_32	eggNOG-mapper	1035196.HMPREF9998_01727	NA	NA
UHGV-0106381_33	PHROG	phrog_6299	terminase small subunit	head and packaging
UHGV-0106381_33	eggNOG-mapper	1226322.HMPREF1545_03543	NA	NA
UHGV-0106381_33	Structural annotation	PF10668	NA	NA
UHGV-0106381_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106381_34	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0106381_34	UniRef90	UniRef90_H3K683	Terminase_6C domain-containing protein	NA
UHGV-0106381_34	eggNOG-mapper	1200557.JHWV01000006_gene1732	Terminase RNaseH-like domain	NA
UHGV-0106381_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0106381_34	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0106381_34	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0106381_34	COG	COG5362	Phage terminase large subunit	NA
UHGV-0106381_34	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0106381_35	KOfam	K09961	NA	NA
UHGV-0106381_35	PHROG	phrog_146	portal protein	head and packaging
UHGV-0106381_35	UniRef90	UniRef90_H3K682	HI1409 family phage-associated protein	NA
UHGV-0106381_35	eggNOG-mapper	1120985.AUMI01000019_gene2237	NA	NA
UHGV-0106381_35	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0106381_35	COG	COG3567	NA	NA
UHGV-0106381_35	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0106381_36	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0106381_36	UniRef90	UniRef90_H3K681	SPP1 gp7 family phage putative head morphogenesis protein	NA
UHGV-0106381_36	eggNOG-mapper	1120985.AUMI01000019_gene2236	Phage Mu protein F like protein	NA
UHGV-0106381_36	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0106381_36	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0106381_36	COG	COG2369	NA	NA
UHGV-0106381_36	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0106381_37	KOfam	K09960	NA	NA
UHGV-0106381_37	PHROG	phrog_530	head maturation protease	head and packaging
UHGV-0106381_37	UniRef90	UniRef90_UPI001E3A5721	NA	NA
UHGV-0106381_37	eggNOG-mapper	1120985.AUMI01000019_gene2235	NA	NA
UHGV-0106381_37	Pfam	PF09979	NA	DUF2213
UHGV-0106381_37	COG	COG3566	NA	NA
UHGV-0106381_37	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0106381_38	PHROG	phrog_563	virion structural protein	head and packaging
UHGV-0106381_38	eggNOG-mapper	1207076.ALAT01000105_gene1906	NA	NA
UHGV-0106381_38	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0106381_39	PHROG	phrog_264	major head protein	head and packaging
UHGV-0106381_39	UniRef90	UniRef90_UPI001E523CC1	NA	NA
UHGV-0106381_39	eggNOG-mapper	1118235.CAJH01000039_gene2470	NA	NA
UHGV-0106381_39	Pfam	PF09950	NA	DUF2184
UHGV-0106381_39	COG	COG4834	NA	NA
UHGV-0106381_39	Structural annotation	PF09950, MF_04113, TIGR01554, COG4834	NA	NA
UHGV-0106381_41	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0106381_41	UniRef90	UniRef90_UPI0018C516B4	NA	NA
UHGV-0106381_41	eggNOG-mapper	925984.E5AGB0_9CAUD	NA	NA
UHGV-0106381_41	Pfam	PF13262	NA	DUF4054
UHGV-0106381_41	Structural annotation	PF13262	NA	NA
UHGV-0106381_42	PHROG	phrog_222	tail protein	tail
UHGV-0106381_42	UniRef90	UniRef90_A0A2I7QV48	Neck protein	NA
UHGV-0106381_42	eggNOG-mapper	1120985.AUMI01000019_gene2230	NA	NA
UHGV-0106381_43	PHROG	phrog_939	head protein	head and packaging
UHGV-0106381_43	eggNOG-mapper	1120985.AUMI01000019_gene2229	NA	NA
UHGV-0106381_43	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0106381_44	PHROG	phrog_7975	tail terminator	connector
UHGV-0106381_44	eggNOG-mapper	1444712.BN1013_02402	NA	NA
UHGV-0106381_44	Structural annotation	PF08873	NA	NA
UHGV-0106381_45	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0106381_45	UniRef90	UniRef90_A0A346B172	NA	NA
UHGV-0106381_45	eggNOG-mapper	1120985.AUMI01000001_gene2168	NA	NA
UHGV-0106381_45	Pfam	PF11863	NA	DUF3383
UHGV-0106381_45	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0106381_46	PHROG	phrog_280	virion structural protein	head and packaging
UHGV-0106381_46	UniRef90	UniRef90_A0A346B173	NA	NA
UHGV-0106381_46	eggNOG-mapper	1120985.AUMI01000001_gene2167	NA	NA
UHGV-0106381_46	Pfam	PF11681	Bacteriophage KPP10, Structural protein ORF10	KPP10_Orf10
UHGV-0106381_46	Structural annotation	PF11681, TIGR02241, COG5437	NA	NA
UHGV-0106381_47	PHROG	phrog_1613	tail assembly chaperone	tail
UHGV-0106381_47	eggNOG-mapper	1120985.AUMI01000001_gene2166	NA	NA
UHGV-0106381_47	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0106381_49	PHROG	phrog_3519	tail length tape measure protein	tail
UHGV-0106381_49	UniRef90	UniRef90_H3K668	Tape measure domain-containing protein	NA
UHGV-0106381_49	eggNOG-mapper	1120985.AUMI01000001_gene2164	tape measure	NA
UHGV-0106381_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0106381_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0106381_49	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0106381_50	PHROG	phrog_817	tail fiber protein	tail
UHGV-0106381_50	eggNOG-mapper	1120985.AUMI01000001_gene2163	NA	NA
UHGV-0106381_50	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0106381_50	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0106381_51	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0106381_51	eggNOG-mapper	1028806.GGE_1969	NA	NA
UHGV-0106381_51	Structural annotation	PF06531	NA	NA
UHGV-0106381_52	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0106381_52	eggNOG-mapper	1120985.AUMI01000001_gene2161	NA	NA
UHGV-0106381_52	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0106381_53	UniRef90	UniRef90_H3K664	Gp138_N domain-containing protein	NA
UHGV-0106381_53	eggNOG-mapper	742740.HMPREF9474_03160	Baseplate assembly protein	NA
UHGV-0106381_53	Pfam	PF18352	NA	Gp138_N
UHGV-0106381_53	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0106381_53	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0106381_53	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0106381_54	PHROG	phrog_120	baseplate protein	tail
UHGV-0106381_54	UniRef90	UniRef90_Q0BRT8	Phage-related protein	NA
UHGV-0106381_54	eggNOG-mapper	1120985.AUMI01000001_gene2159	NA	NA
UHGV-0106381_54	Structural annotation	TIGR03357, COG3628	NA	NA
UHGV-0106381_55	PHROG	phrog_6	baseplate protein	tail
UHGV-0106381_55	UniRef90	UniRef90_A0A346B181	Baseplate_J domain-containing protein	NA
UHGV-0106381_55	eggNOG-mapper	1120985.AUMI01000001_gene2158	Baseplate J-like protein	NA
UHGV-0106381_55	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0106381_55	COG	COG3299	NA	NA
UHGV-0106381_55	Structural annotation	PF03434, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0106381_56	PHROG	phrog_587	structural protein	head and packaging
UHGV-0106381_56	UniRef90	UniRef90_UPI001E4228BA	NA	NA
UHGV-0106381_56	eggNOG-mapper	94624.Bpet0997	NA	NA
UHGV-0106381_56	Pfam	PF11041	NA	DUF2612
UHGV-0106381_56	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0106381_57	UniRef90	UniRef90_UPI001874BE4F	pyocin knob domain-containing protein	NA