UHGV-0106443

Genome information

Genome length 41,802 bps

CDS count 66

Completeness 98.88% (high-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106443
vOTU ID	vOTU-075314
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245324
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.88% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.19
Jumbo phage	No

Genome content
Genome length	41,802 bps
GC content	54.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.48%
Average CDS length	583.18 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106443_1	KOfam	K03695	clpB; ATP-dependent Clp protease ATP-binding subunit ClpB	NA
UHGV-0106443_1	PHROG	phrog_4871	ATP-dependent protease	other
UHGV-0106443_1	UniRef90	UniRef90_C7H1J1	Putative phage tail component domain protein	NA
UHGV-0106443_1	eggNOG-mapper	742740.HMPREF9474_02248	Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE	NA
UHGV-0106443_1	Pfam	PF02861	Clp amino terminal domain, pathogenicity island component	Clp_N
UHGV-0106443_1	COG	COG0542	ATP-dependent Clp protease, ATP-binding subunit ClpA	NA
UHGV-0106443_2	PHROG	phrog_263	holin	lysis
UHGV-0106443_2	UniRef90	UniRef90_A0A2A6ZBA4	Phage holin	NA
UHGV-0106443_2	eggNOG-mapper	748224.HMPREF9436_00409	SPP1 phage holin	NA
UHGV-0106443_2	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0106443_2	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0106443_2	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0106443_3	PHROG	phrog_1863	NA	unknown function
UHGV-0106443_3	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0106443_4	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0106443_4	PHROG	phrog_894	endolysin	lysis
UHGV-0106443_4	UniRef90	UniRef90_A0A2A6ZJ29	Peptidase M15	NA
UHGV-0106443_4	eggNOG-mapper	748224.HMPREF9436_00407	Peptidase M15A	NA
UHGV-0106443_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0106443_4	COG	COG3108	NA	NA
UHGV-0106443_4	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0106443_5	PHROG	phrog_1382	NA	unknown function
UHGV-0106443_5	UniRef90	UniRef90_A0A6N9P4T5	ASCH domain-containing protein	NA
UHGV-0106443_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0106443_5	Structural annotation	NF040910	NA	NA
UHGV-0106443_6	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0106443_6	PHROG	phrog_2636	tail fiber protein	tail
UHGV-0106443_6	eggNOG-mapper	657322.FPR_13530	domain, Protein	NA
UHGV-0106443_6	COG	COG5492	NA	NA
UHGV-0106443_6	Structural annotation	PF21567	NA	NA
UHGV-0106443_7	PHROG	phrog_3558	tail protein	tail
UHGV-0106443_7	UniRef90	UniRef90_UPI001C01D15B	phage tail protein	NA
UHGV-0106443_7	eggNOG-mapper	1235799.C818_04233	Prophage endopeptidase tail	NA
UHGV-0106443_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0106443_7	COG	COG4926	Phage-related protein	NA
UHGV-0106443_7	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0106443_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0106443_8	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0106443_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0106443_8	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0106443_9	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0106443_9	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0106443_9	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0106443_9	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0106443_9	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0106443_9	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0106443_9	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0106443_12	PHROG	phrog_885	major tail protein	tail
UHGV-0106443_12	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0106443_12	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0106443_13	Structural annotation	PF13554	NA	NA
UHGV-0106443_14	PHROG	phrog_17977	NA	unknown function
UHGV-0106443_14	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0106443_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0106443_16	PHROG	phrog_544	major head protein	head and packaging
UHGV-0106443_16	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0106443_16	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0106443_16	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0106443_18	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0106443_18	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0106443_18	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0106443_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0106443_19	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0106443_19	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0106443_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0106443_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0106443_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0106443_20	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0106443_20	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0106443_20	UniRef90	UniRef90_A0A396LJD2	Bro-N domain-containing protein	NA
UHGV-0106443_20	eggNOG-mapper	663952.SDD27957_09050	COG3617 Prophage antirepressor	NA
UHGV-0106443_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0106443_20	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0106443_20	COG	COG3617	Prophage antirepressor	NA
UHGV-0106443_20	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0106443_23	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0106443_23	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0106443_23	UniRef90	UniRef90_A0A373NXC2	XRE family transcriptional regulator	NA
UHGV-0106443_23	eggNOG-mapper	1117108.PAALTS15_13457	Transcriptional regulator	NA
UHGV-0106443_23	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0106443_23	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0106443_23	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0106443_24	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0106443_24	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0106443_24	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0106443_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0106443_24	COG	COG2369	NA	NA
UHGV-0106443_24	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0106443_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0106443_25	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0106443_25	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0106443_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0106443_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0106443_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106443_26	PHROG	phrog_10250	NA	unknown function
UHGV-0106443_26	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0106443_26	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0106443_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0106443_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106443_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106443_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0106443_27	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0106443_27	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0106443_27	Structural annotation	PF04218	NA	NA
UHGV-0106443_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0106443_28	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0106443_28	eggNOG-mapper	748224.HMPREF9436_01463	NA	NA
UHGV-0106443_28	Pfam	PF07374	NA	DUF1492
UHGV-0106443_28	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0106443_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0106443_30	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0106443_30	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0106443_30	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0106443_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0106443_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0106443_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0106443_31	Structural annotation	TIGR04165	NA	NA
UHGV-0106443_32	PHROG	phrog_3136	NA	unknown function
UHGV-0106443_32	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0106443_32	eggNOG-mapper	1235793.C809_02645	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0106443_32	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0106443_32	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0106443_33	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0106443_33	UniRef90	UniRef90_A0A355KVL2	DNA cytosine methyltransferase	NA
UHGV-0106443_33	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0106443_33	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0106443_33	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0106443_35	Structural annotation	PF11417	NA	NA
UHGV-0106443_36	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0106443_36	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0106443_36	UniRef90	UniRef90_A0A844D5V0	DnaD domain protein	NA
UHGV-0106443_36	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0106443_36	Pfam	PF19808	NA	DUF6291
UHGV-0106443_36	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0106443_36	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0106443_36	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0106443_37	UniRef90	UniRef90_UPI001CBB85F6	single-stranded DNA-binding protein	NA
UHGV-0106443_37	Structural annotation	PF00436, MF_00720, NF004512, COG0629	NA	NA
UHGV-0106443_38	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106443_38	UniRef90	UniRef90_A0A3A6EAW6	Phage recombination protein Bet	NA
UHGV-0106443_38	eggNOG-mapper	1235794.C811_01355	RecT family	NA
UHGV-0106443_38	Pfam	PF03837	RecT family	RecT
UHGV-0106443_38	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0106443_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0106443_38	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0106443_39	PHROG	phrog_674	NA	unknown function
UHGV-0106443_39	UniRef90	UniRef90_A0A3A6E846	NA	NA
UHGV-0106443_39	eggNOG-mapper	556268.OFAG_00840	NA	NA
UHGV-0106443_39	Pfam	PF07083	NA	DUF1351
UHGV-0106443_39	Structural annotation	PF07083	NA	NA
UHGV-0106443_40	Structural annotation	PF14120	NA	NA
UHGV-0106443_42	Structural annotation	PF09537	NA	NA
UHGV-0106443_43	Structural annotation	PF12270, NF040944	NA	NA
UHGV-0106443_44	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0106443_46	PHROG	phrog_4433	NA	unknown function
UHGV-0106443_46	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0106443_46	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0106443_46	Structural annotation	PF12120, NF007410	NA	NA
UHGV-0106443_47	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0106443_47	Structural annotation	PF17516, NF007197	NA	NA
UHGV-0106443_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0106443_48	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0106443_48	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0106443_48	eggNOG-mapper	1230342.CTM_16892	Phage antirepressor protein	NA
UHGV-0106443_48	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0106443_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0106443_48	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0106443_48	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0106443_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106443_49	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0106443_49	eggNOG-mapper	699218.HMPREF0889_0208	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106443_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106443_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0106443_49	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0106443_50	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0106443_50	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0106443_51	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0106443_54	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0106443_54	UniRef90	UniRef90_UPI001876A0BB	Ltp family lipoprotein	NA
UHGV-0106443_54	eggNOG-mapper	428127.EUBDOL_01530	Host cell surface-exposed lipoprotein	NA
UHGV-0106443_54	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0106443_54	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0106443_54	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0106443_54	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0106443_56	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0106443_56	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0106443_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106443_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106443_56	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0106443_57	KOfam	K14059	int; integrase	NA
UHGV-0106443_57	PHROG	phrog_1	integrase	integration and excision
UHGV-0106443_57	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0106443_57	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0106443_57	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106443_57	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0106443_57	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0106443_59	Structural annotation	PF12510	NA	NA
UHGV-0106443_60	PHROG	phrog_20016	NA	unknown function
UHGV-0106443_60	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0106443_60	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0106443_60	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0106443_61	PHROG	phrog_16490	NA	unknown function
UHGV-0106443_61	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0106443_62	PHROG	phrog_22984	NA	unknown function
UHGV-0106443_63	PHROG	phrog_21718	NA	unknown function
UHGV-0106443_63	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0106443_64	PHROG	phrog_3754	NA	unknown function
UHGV-0106443_64	eggNOG-mapper	1485543.JMME01000025_gene2462	NA	NA