UHGV-0106476

Genome information

Genome length 31,719 bps

CDS count 49

Completeness 80.00% (medium-quality)

geNomad score 0.9811

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106476
vOTU ID	vOTU-041892
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248739
BioSample	SAMEA3708727
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.00% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	41
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9811
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	94.78
Jumbo phage	No

Genome content
Genome length	31,719 bps
GC content	48.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	87.65%
Average CDS length	571.16 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106476_1	PHROG	phrog_6847	NA	unknown function
UHGV-0106476_1	UniRef90	UniRef90_UPI001C707C58	NA	NA
UHGV-0106476_1	eggNOG-mapper	1147143.K7P7E4_9CAUD	NA	NA
UHGV-0106476_2	PHROG	phrog_4049	NA	unknown function
UHGV-0106476_2	eggNOG-mapper	637730.C8XUB7_9CAUD	NA	NA
UHGV-0106476_2	Structural annotation	COG3271	NA	NA
UHGV-0106476_3	PHROG	phrog_14548	NA	unknown function
UHGV-0106476_3	UniRef90	UniRef90_A0A549U8U3	Ead/Ea22-like family protein	NA
UHGV-0106476_3	eggNOG-mapper	1115515.EV102420_11_00490	NA	NA
UHGV-0106476_3	Pfam	PF13935	Ead/Ea22-like protein	Ead_Ea22
UHGV-0106476_3	Structural annotation	PF13935	NA	NA
UHGV-0106476_4	PHROG	phrog_14548	NA	unknown function
UHGV-0106476_4	UniRef90	UniRef90_UPI000B7E8928	Eae protein	NA
UHGV-0106476_4	eggNOG-mapper	329864.B8K1D5_9CAUD	Ead/Ea22-like protein	NA
UHGV-0106476_5	PHROG	phrog_1117	NA	unknown function
UHGV-0106476_5	UniRef90	UniRef90_UPI00092DA469	NA	NA
UHGV-0106476_5	eggNOG-mapper	1147154.K7PLP7_9CAUD	NA	NA
UHGV-0106476_5	Pfam	PF10930	NA	DUF2737
UHGV-0106476_5	Structural annotation	PF10930	NA	NA
UHGV-0106476_6	PHROG	phrog_656	abc2 anti-RecBCD	moron, auxiliary metabolic gene and host takeover
UHGV-0106476_6	UniRef90	UniRef90_A0A2X1L987	NA	NA
UHGV-0106476_6	eggNOG-mapper	221029.Q76H42_9CAUD	NA	NA
UHGV-0106476_6	Pfam	PF11043	Bacteriophage P22, anti-RecBCD protein 2	Anti-RecBCD_p2
UHGV-0106476_6	dbAPIS	APIS020	Bacteriophage P22 Abc2 protein binds to the RecBCD enzyme from E. coli to promote phage growth and recombination; the RecBCD-Abc2 structure shows that Abc2 binds to the Chi-recognition domains of the RecC subunit in a position that might enable it to mediate the loading of phage recombinases onto its single-stranded DNA products.	NA
UHGV-0106476_6	Structural annotation	PF11043	NA	NA
UHGV-0106476_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0106476_7	UniRef90	UniRef90_Q9MCR0	Gp40	NA
UHGV-0106476_7	eggNOG-mapper	754331.AEME01000001_gene3600	NA	NA
UHGV-0106476_8	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106476_8	UniRef90	UniRef90_A0A0C2DES7	DNA single-strand annealing protein essential recombination function protein Erf	NA
UHGV-0106476_8	eggNOG-mapper	754331.AEME01000001_gene3599	ERF superfamily	NA
UHGV-0106476_8	Pfam	PF04404	ERF superfamily	ERF
UHGV-0106476_8	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0106476_9	PHROG	phrog_1723	recombinase	other
UHGV-0106476_9	UniRef90	UniRef90_A0A0H3CPM1	Gp42	NA
UHGV-0106476_9	eggNOG-mapper	10761.Q716E6_BPSFV	NA	NA
UHGV-0106476_10	PHROG	phrog_2055	Kil protein for bacterial septation inhibition	other
UHGV-0106476_10	UniRef90	UniRef90_P18682	Protein kil	NA
UHGV-0106476_10	eggNOG-mapper	10761.Q716E4_BPSFV	Bacteriophage lambda Kil protein	NA
UHGV-0106476_10	Pfam	PF06301	Bacteriophage lambda Kil protein	Lambda_Kil
UHGV-0106476_11	PHROG	phrog_550	CIII anti-termination	transcription regulation
UHGV-0106476_11	UniRef90	UniRef90_A0A0C2DK03	Lambda Phage CIII	NA
UHGV-0106476_11	eggNOG-mapper	10761.Q716E3_BPSFV	Lambda Phage CIII	NA
UHGV-0106476_11	Pfam	PF02061	Lambda Phage CIII	Lambda_CIII
UHGV-0106476_12	PHROG	phrog_21365	NA	unknown function
UHGV-0106476_12	UniRef90	UniRef90_A0A376L824	Cell envelope biogenesis protein TolA	NA
UHGV-0106476_12	eggNOG-mapper	10761.Q716E2_BPSFV	NA	NA
UHGV-0106476_13	PHROG	phrog_10407	NA	unknown function
UHGV-0106476_14	PHROG	phrog_1273	NA	unknown function
UHGV-0106476_14	UniRef90	UniRef90_Q76H36	ORF18	NA
UHGV-0106476_14	eggNOG-mapper	221029.Q76H36_9CAUD	NA	NA
UHGV-0106476_15	PHROG	phrog_1636	NA	unknown function
UHGV-0106476_15	UniRef90	UniRef90_K4VFM7	Gp45 (Fragment)	NA
UHGV-0106476_15	eggNOG-mapper	155864.EDL933_1363	NA	NA
UHGV-0106476_16	PHROG	phrog_5305	NA	unknown function
UHGV-0106476_17	PHROG	phrog_271	anti-termination protein N-like	transcription regulation
UHGV-0106476_17	UniRef90	UniRef90_K7PH69	Antitermination protein N	NA
UHGV-0106476_17	eggNOG-mapper	1147146.K7P8A7_9CAUD	NA	NA
UHGV-0106476_18	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0106476_18	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0106476_18	UniRef90	UniRef90_Q9AZ21	Repressor protein cI	NA
UHGV-0106476_18	eggNOG-mapper	1147143.K7P7K3_9CAUD	protein disulfide oxidoreductase activity	NA
UHGV-0106476_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106476_18	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0106476_18	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0106476_19	UniRef90	UniRef90_A0A0C2AWU6	Cro	NA
UHGV-0106476_19	eggNOG-mapper	1147143.K7P6T9_9CAUD	Cro	NA
UHGV-0106476_19	Pfam	PF09048	Cro	Cro
UHGV-0106476_19	Structural annotation	PF09048	NA	NA
UHGV-0106476_20	PHROG	phrog_191	CII-like transcriptional activator	transcription regulation
UHGV-0106476_20	UniRef90	UniRef90_A0A137BYM9	Lambda phage CII family protein	NA
UHGV-0106476_20	eggNOG-mapper	432200.K7P7S4_9CAUD	Bacteriophage CII protein	NA
UHGV-0106476_20	Pfam	PF05269	Bacteriophage CII protein	Phage_CII
UHGV-0106476_20	Structural annotation	PF05269	NA	NA
UHGV-0106476_21	PHROG	phrog_1331	NA	unknown function
UHGV-0106476_21	UniRef90	UniRef90_A0A0J2A1R9	NA	NA
UHGV-0106476_21	eggNOG-mapper	10761.Q716D4_BPSFV	NA	NA
UHGV-0106476_22	PHROG	phrog_24933	NA	unknown function
UHGV-0106476_22	UniRef90	UniRef90_A0A0K4ZM66	DNA replication protein	NA
UHGV-0106476_22	eggNOG-mapper	10761.Q716D3_BPSFV	calcium ion binding	NA
UHGV-0106476_22	Structural annotation	PF09681, TIGR01714, COG0640	NA	NA
UHGV-0106476_23	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0106476_23	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0106476_23	UniRef90	UniRef90_A0A625CCT9	DNA helicase	NA
UHGV-0106476_23	eggNOG-mapper	432200.K7P7N4_9CAUD	DNA helicase activity	NA
UHGV-0106476_23	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0106476_23	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0106476_23	NCBIFam	TIGR03600.1	phage replicative helicase, DnaB family	NA
UHGV-0106476_23	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0106476_24	PHROG	phrog_5907	NA	unknown function
UHGV-0106476_24	UniRef90	UniRef90_Q1R927	Bacteriophage HK97 gp56	NA
UHGV-0106476_25	PHROG	phrog_6308	NA	unknown function
UHGV-0106476_26	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0106476_26	UniRef90	UniRef90_P03765	Protein ninB	NA
UHGV-0106476_26	eggNOG-mapper	1147157.K7PKW7_9CAUD	NinB protein	NA
UHGV-0106476_26	Pfam	PF05772	NinB protein	NinB
UHGV-0106476_26	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0106476_27	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0106476_27	UniRef90	UniRef90_A0A0F3VV30	DNA N-6-adenine-methyltransferase of bacteriophage	NA
UHGV-0106476_27	eggNOG-mapper	1147149.K7PMG2_9CAUD	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0106476_27	PADLOC	oMTase_00010	orphan methyltransferase	RM
UHGV-0106476_27	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0106476_27	NCBIFam	TIGR01712.1	phage N-6-adenine-methyltransferase	NA
UHGV-0106476_27	Structural annotation	PF05869, MF_01872, TIGR01712, COG4123	NA	NA
UHGV-0106476_28	PHROG	phrog_268	NA	unknown function
UHGV-0106476_28	UniRef90	UniRef90_P03771	Protein ninH	NA
UHGV-0106476_28	eggNOG-mapper	10710.NINH_LAMBD	Phage NinH protein	NA
UHGV-0106476_28	Pfam	PF06322	Phage NinH protein	Phage_NinH
UHGV-0106476_28	Structural annotation	PF06322	NA	NA
UHGV-0106476_29	KOfam	K07314	pphB; serine/threonine protein phosphatase 2 [EC:3.1.3.16]	NA
UHGV-0106476_29	PHROG	phrog_171	NinG/ Rap DNA junction specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106476_29	UniRef90	UniRef90_B1EP57	Serine/threonine-protein phosphatase 1	NA
UHGV-0106476_29	eggNOG-mapper	10761.Q716B9_BPSFV	endonuclease activity	NA
UHGV-0106476_29	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0106476_29	Structural annotation	PF12850, MF_01443, NF007425, COG0622	NA	NA
UHGV-0106476_30	PHROG	phrog_943	anti-termination protein Q-like	transcription regulation
UHGV-0106476_30	UniRef90	UniRef90_D2A7X4	Q protein	NA
UHGV-0106476_30	eggNOG-mapper	10761.Q716B8_BPSFV	negative regulation of DNA-dependent transcription, termination	NA
UHGV-0106476_30	Pfam	PF06530	Phage antitermination protein Q	Phage_antitermQ
UHGV-0106476_30	Structural annotation	PF06530	NA	NA
UHGV-0106476_31	PHROG	phrog_99	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106476_31	UniRef90	UniRef90_A0A8I2WTS4	HNHc domain-containing protein	NA
UHGV-0106476_31	eggNOG-mapper	582899.Hden_0109	PFAM Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-0106476_31	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0106476_32	PHROG	phrog_20	holin	lysis
UHGV-0106476_32	UniRef90	UniRef90_O80287	Gp13	NA
UHGV-0106476_32	eggNOG-mapper	90371.CY43_01820	Bacteriophage holin family HP1	NA
UHGV-0106476_32	Pfam	PF16080	Bacteriophage holin family HP1	Phage_holin_2_3
UHGV-0106476_33	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0106476_33	PHROG	phrog_7	endolysin	lysis
UHGV-0106476_33	UniRef90	UniRef90_P78285	Lysozyme RrrD	NA
UHGV-0106476_33	eggNOG-mapper	1168548.I6R0P2_9CAUD	Phage lysozyme	NA
UHGV-0106476_33	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0106476_33	HAMAP	MF_04110	Endolysin	NA
UHGV-0106476_33	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0106476_34	KOfam	K14744	rzpD; prophage endopeptidase [EC:3.4.-.-]	NA
UHGV-0106476_34	PHROG	phrog_13	Rz-like spanin	lysis
UHGV-0106476_34	UniRef90	UniRef90_A0A653FRE1	Spanin, inner membrane subunit	NA
UHGV-0106476_34	eggNOG-mapper	1127357.I1TEI0_9CAUD	Bacteriophage Rz lysis protein	NA
UHGV-0106476_34	Pfam	PF03245	Bacteriophage Rz lysis protein	Phage_lysis
UHGV-0106476_34	HAMAP	MF_04137	Spanin, inner membrane subunit	NA
UHGV-0106476_34	Structural annotation	PF03245, MF_04137	NA	NA
UHGV-0106476_35	PHROG	phrog_571	NA	unknown function
UHGV-0106476_35	UniRef90	UniRef90_A0A067HHZ1	NA	NA
UHGV-0106476_35	eggNOG-mapper	10761.Q716B0_BPSFV	NA	NA
UHGV-0106476_35	Pfam	PF10834	NA	DUF2560
UHGV-0106476_35	Structural annotation	PF10834	NA	NA
UHGV-0106476_36	PHROG	phrog_1482	terminase small subunit	head and packaging
UHGV-0106476_36	UniRef90	UniRef90_A0A137B3J5	Terminase small subunit	NA
UHGV-0106476_36	eggNOG-mapper	754331.AEME01000001_gene4	NA	NA
UHGV-0106476_36	Pfam	PF20901	Bacteriophage Sf6, terminase small subunit-like	Sf6_terminase
UHGV-0106476_36	Structural annotation	PF20901	NA	NA
UHGV-0106476_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106476_37	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0106476_37	UniRef90	UniRef90_Q9AZ00	Terminase large subunit	NA
UHGV-0106476_37	eggNOG-mapper	754331.AEME01000001_gene5	Phage terminase, large subunit	NA
UHGV-0106476_37	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0106476_37	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106476_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106476_37	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0106476_38	PHROG	phrog_14911	NA	unknown function
UHGV-0106476_38	UniRef90	UniRef90_E9TCA7	Putative ATP synthase F1, epsilon subunit	NA
UHGV-0106476_38	eggNOG-mapper	754331.AEME01000001_gene6	Phage P22-like portal protein	NA
UHGV-0106476_38	Pfam	PF16510	Phage P22-like portal protein	P22_portal
UHGV-0106476_38	Structural annotation	PF16510, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0106476_39	PHROG	phrog_648	head scaffolding protein	head and packaging
UHGV-0106476_39	UniRef90	UniRef90_A0A6C9DRL0	Scaffolding protein	NA
UHGV-0106476_39	eggNOG-mapper	754331.AEME01000001_gene7	NA	NA
UHGV-0106476_39	Structural annotation	PF09306	NA	NA
UHGV-0106476_40	PHROG	phrog_283	major head protein	head and packaging
UHGV-0106476_40	UniRef90	UniRef90_A0A7L7ST24	Coat protein	NA
UHGV-0106476_40	eggNOG-mapper	754331.AEME01000001_gene8	P22 coat protein - gene protein 5	NA
UHGV-0106476_40	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0106476_40	Structural annotation	PF11651, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0106476_41	PHROG	phrog_1175	NA	unknown function
UHGV-0106476_42	PHROG	phrog_637	head-tail adaptor Ad3	connector
UHGV-0106476_42	UniRef90	UniRef90_A0A066T024	DNA stabilization protein	NA
UHGV-0106476_42	eggNOG-mapper	754331.AEME01000001_gene10	Packaged DNA stabilization protein gp4	NA
UHGV-0106476_42	Pfam	PF11650	P22 tail accessory factor	P22_Tail-4
UHGV-0106476_42	Structural annotation	PF11650	NA	NA
UHGV-0106476_43	PHROG	phrog_578	head closure Hc3	connector
UHGV-0106476_43	UniRef90	UniRef90_P26749	Packaged DNA stabilization protein gp10	NA
UHGV-0106476_43	eggNOG-mapper	754331.AEME01000001_gene11	Packaged DNA stabilization protein gp10	NA
UHGV-0106476_43	Pfam	PF11134	Phage stabilisation protein	Phage_stabilise
UHGV-0106476_43	Structural annotation	PF11134, MF_01282, NF000022, NF038128, COG3292	NA	NA
UHGV-0106476_44	PHROG	phrog_1219	tail needle protein	tail
UHGV-0106476_44	UniRef90	UniRef90_Q9AYZ3	DNA stabilization protein	NA
UHGV-0106476_44	eggNOG-mapper	1090133.G5DA78_9CAUD	NA	NA
UHGV-0106476_45	PHROG	phrog_651	head morphogenesis	head and packaging
UHGV-0106476_45	UniRef90	UniRef90_G8EYJ5	Head assembly protein	NA
UHGV-0106476_45	eggNOG-mapper	1090133.G8EYJ5_9CAUD	NA	NA
UHGV-0106476_45	Pfam	PF11039	NA	DUF2824
UHGV-0106476_45	Structural annotation	PF11039, MF_02210, NF011709, COG1670	NA	NA
UHGV-0106476_46	PHROG	phrog_598	DNA ejection	DNA, RNA and nucleotide metabolism
UHGV-0106476_46	UniRef90	UniRef90_Q01074	Internal virion protein gp7	NA
UHGV-0106476_46	eggNOG-mapper	155148.VG07_BPHK6	viral entry into host cell	NA
UHGV-0106476_47	PHROG	phrog_2534	released from the phage upon host infection	other
UHGV-0106476_47	UniRef90	UniRef90_B8K1I6	Gp20	NA
UHGV-0106476_47	eggNOG-mapper	329864.B8K1I6_9CAUD	Pfam:Inj_translocase	NA
UHGV-0106476_47	Pfam	PF16928	DNA/protein translocase of phage P22 injectosome	Inj_translocase
UHGV-0106476_47	Structural annotation	PF16928	NA	NA
UHGV-0106476_48	PHROG	phrog_770	DNA transfer protein	other
UHGV-0106476_48	UniRef90	UniRef90_UPI0010B0AB14	lytic transglycosylase domain-containing protein	NA
UHGV-0106476_48	eggNOG-mapper	10761.Q716G2_BPSFV	NA	NA
UHGV-0106476_49	UniRef90	UniRef90_UPI001CDA753F	Arc family DNA-binding protein	NA
UHGV-0106476_49	eggNOG-mapper	754331.AEME01000001_gene17	Arc-like DNA binding domain	NA
UHGV-0106476_49	Pfam	PF11423	Regulatory protein Mnt	Repressor_Mnt