UHGV-0106536

Genome information

Genome length 32,078 bps

CDS count 52

Completeness 100.00% (complete)

geNomad score 0.9527

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106536
vOTU ID	vOTU-045542
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_246969
BioSample	SAMEA3708715
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9527
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.23
Jumbo phage	No

Genome content
Genome length	32,078 bps
GC content	37.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	84.89%
Average CDS length	527.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106536_1	PHROG	phrog_14105	NA	unknown function
UHGV-0106536_1	UniRef90	UniRef90_UPI001D11F597	pentapeptide repeat-containing protein	NA
UHGV-0106536_1	eggNOG-mapper	97138.C820_00368	PPE family	NA
UHGV-0106536_1	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0106536_1	COG	COG5651	PPE-repeat protein	NA
UHGV-0106536_1	Structural annotation	PF01469	NA	NA
UHGV-0106536_7	PHROG	phrog_11237	NA	unknown function
UHGV-0106536_7	eggNOG-mapper	610130.Closa_0738	NA	NA
UHGV-0106536_8	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0106536_8	PHROG	phrog_216	integrase	integration and excision
UHGV-0106536_8	UniRef90	UniRef90_F2JNB9	Integrase family protein	NA
UHGV-0106536_8	eggNOG-mapper	642492.Clole_1851	integrase family	NA
UHGV-0106536_8	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106536_8	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0106536_8	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0106536_9	PHROG	phrog_1066	NA	unknown function
UHGV-0106536_9	UniRef90	UniRef90_A0A7X8WV97	NA	NA
UHGV-0106536_9	eggNOG-mapper	561177.ANHYDRO_01405	NA	NA
UHGV-0106536_9	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0106536_10	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0106536_10	UniRef90	UniRef90_UPI001874708D	terminase large subunit	NA
UHGV-0106536_10	eggNOG-mapper	1203606.HMPREF1526_01335	Terminase	NA
UHGV-0106536_10	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0106536_10	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0106536_10	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0106536_10	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0106536_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0106536_11	UniRef90	UniRef90_A0A7X9A1M1	Phage portal protein	NA
UHGV-0106536_11	eggNOG-mapper	411465.PEPMIC_00733	Phage portal protein	NA
UHGV-0106536_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0106536_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0106536_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0106536_12	KOfam	K06904	NA	NA
UHGV-0106536_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0106536_12	UniRef90	UniRef90_A0A8J6PCV7	HK97 family phage prohead protease	NA
UHGV-0106536_12	eggNOG-mapper	1321814.HMPREF9089_00929	Caudovirus prohead serine protease	NA
UHGV-0106536_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0106536_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0106536_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0106536_13	PHROG	phrog_10	major head protein	head and packaging
UHGV-0106536_13	UniRef90	UniRef90_R6GU80	Phage major capsid protein family	NA
UHGV-0106536_13	eggNOG-mapper	1203606.HMPREF1526_01339	Phage capsid family	NA
UHGV-0106536_13	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0106536_13	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0106536_13	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0106536_13	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0106536_14	PHROG	phrog_5223	neck protein	connector
UHGV-0106536_14	UniRef90	UniRef90_A0A178TEK5	Putative phage protein (Possible DNA packaging)	NA
UHGV-0106536_14	eggNOG-mapper	931626.Awo_c31020	NA	NA
UHGV-0106536_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0106536_15	PHROG	phrog_25	head closure Hc1	connector
UHGV-0106536_15	UniRef90	UniRef90_G9XA50	Phage head-tail adaptor	NA
UHGV-0106536_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0106536_15	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0106536_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0106536_16	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0106536_16	UniRef90	UniRef90_A0A1G9I5I6	Phage protein, HK97 gp10 family	NA
UHGV-0106536_16	Pfam	PF02969	TATA box binding protein associated factor (TAF)	TAF
UHGV-0106536_16	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0106536_17	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0106536_18	PHROG	phrog_88	major tail protein	tail
UHGV-0106536_18	UniRef90	UniRef90_UPI001D063F9B	phage tail protein	NA
UHGV-0106536_18	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0106536_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0106536_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0106536_21	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0106536_21	UniRef90	UniRef90_G9XA44	PhageMin_Tail domain-containing protein	NA
UHGV-0106536_21	eggNOG-mapper	796940.HMPREF9628_00135	phage tail tape measure protein	NA
UHGV-0106536_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0106536_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0106536_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0106536_22	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0106536_22	eggNOG-mapper	642492.Clole_0981	NA	NA
UHGV-0106536_22	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0106536_23	PHROG	phrog_26795	NA	unknown function
UHGV-0106536_23	eggNOG-mapper	642492.Clole_0982	NA	NA
UHGV-0106536_23	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0106536_25	PHROG	phrog_4492	tail fiber protein	tail
UHGV-0106536_25	UniRef90	UniRef90_A0A0M2NIZ4	Microcystin dependent protein	NA
UHGV-0106536_25	eggNOG-mapper	931276.Cspa_c10280	nuclear chromosome segregation	NA
UHGV-0106536_25	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0106536_25	Structural annotation	PF03425, NF033675	NA	NA
UHGV-0106536_26	PHROG	phrog_24451	NA	unknown function
UHGV-0106536_26	UniRef90	UniRef90_A0A3P6KYQ0	NA	NA
UHGV-0106536_26	eggNOG-mapper	931276.Cspa_c07590	NA	NA
UHGV-0106536_27	Pfam	PF20787	SPP1 phage GP23.1	SPP1_GP23-1
UHGV-0106536_29	eggNOG-mapper	97138.C820_00248	NA	NA
UHGV-0106536_30	PHROG	phrog_962	holin	lysis
UHGV-0106536_30	UniRef90	UniRef90_UPI00085C48B3	phage holin	NA
UHGV-0106536_30	eggNOG-mapper	936375.HMPREF1152_0014	Bacteriophage holin	NA
UHGV-0106536_30	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0106536_30	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0106536_30	COG	COG5546	NA	NA
UHGV-0106536_30	Structural annotation	COG5546	NA	NA
UHGV-0106536_31	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0106536_31	PHROG	phrog_435	endolysin	lysis
UHGV-0106536_31	UniRef90	UniRef90_UPI0013565F11	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0106536_31	eggNOG-mapper	1347392.CCEZ01000062_gene685	Ami_3	NA
UHGV-0106536_31	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0106536_31	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0106536_31	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0106536_32	PHROG	phrog_4085	NA	unknown function
UHGV-0106536_32	UniRef90	UniRef90_UPI0004E0B415	NA	NA
UHGV-0106536_32	eggNOG-mapper	546271.Selsp_1987	NA	NA
UHGV-0106536_32	Pfam	PF19807	NA	DUF6290
UHGV-0106536_32	Structural annotation	PF19807, NF041418, COG4710	NA	NA
UHGV-0106536_33	KOfam	K06218	relE, stbE; mRNA interferase RelE/StbE	NA
UHGV-0106536_33	PHROG	phrog_1213	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0106536_33	UniRef90	UniRef90_UPI0004E1BFFB	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0106536_33	eggNOG-mapper	1235800.C819_02632	ParE toxin of type II toxin-antitoxin system, parDE	NA
UHGV-0106536_33	Pfam	PF05016	ParE toxin of type II toxin-antitoxin system, parDE	ParE_toxin
UHGV-0106536_33	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0106536_33	COG	COG2026	mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system	NA
UHGV-0106536_33	Structural annotation	PF05016, TIGR00053, COG2026	NA	NA
UHGV-0106536_34	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0106536_34	PHROG	phrog_2737	NA	unknown function
UHGV-0106536_34	UniRef90	UniRef90_A0A413ZWL5	Type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0106536_34	eggNOG-mapper	1127695.HMPREF9163_01408	Addiction module antitoxin, RelB DinJ family	NA
UHGV-0106536_34	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0106536_34	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0106536_34	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0106536_34	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA
UHGV-0106536_35	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0106536_35	PHROG	phrog_95	integrase	integration and excision
UHGV-0106536_35	UniRef90	UniRef90_A0A7X8EUN0	Recombinase family protein	NA
UHGV-0106536_35	eggNOG-mapper	1291050.JAGE01000001_gene683	Resolvase, N-terminal domain protein	NA
UHGV-0106536_35	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0106536_35	Pfam	PF07508	Recombinase	Recombinase
UHGV-0106536_35	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0106536_35	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0106536_35	Structural annotation	PF07508, NF041201	NA	NA
UHGV-0106536_36	UniRef90	UniRef90_UPI001650FA03	Ltp family lipoprotein	NA
UHGV-0106536_36	eggNOG-mapper	748224.HMPREF9436_00119	NA	NA
UHGV-0106536_37	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0106536_37	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0106536_37	UniRef90	UniRef90_A0A173XHX2	Helix-turn-helix domain-containing protein	NA
UHGV-0106536_37	eggNOG-mapper	411473.RUMCAL_03095	NA	NA
UHGV-0106536_37	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0106536_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106536_37	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0106536_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0106536_37	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0106536_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0106536_38	UniRef90	UniRef90_A0A417QHZ7	XRE family transcriptional regulator	NA
UHGV-0106536_38	eggNOG-mapper	1132442.KB889752_gene869	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106536_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106536_38	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0106536_39	UniRef90	UniRef90_A0A3A9DAK2	Transposase	NA
UHGV-0106536_39	eggNOG-mapper	706434.HMPREF9429_00181	NA	NA
UHGV-0106536_39	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0106536_39	Structural annotation	PF18812, COG2929	NA	NA
UHGV-0106536_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0106536_40	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106536_40	UniRef90	UniRef90_A0A645FYT1	HTH cro/C1-type domain-containing protein	NA
UHGV-0106536_40	eggNOG-mapper	742733.HMPREF9469_04846	sequence-specific DNA binding	NA
UHGV-0106536_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106536_40	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106536_40	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0106536_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106536_42	UniRef90	UniRef90_A0A3A9I115	XRE family transcriptional regulator	NA
UHGV-0106536_42	eggNOG-mapper	1226325.HMPREF1548_03112	Helix-turn-helix domain	NA
UHGV-0106536_42	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0106536_42	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0106536_45	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0106536_45	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106536_45	UniRef90	UniRef90_A0A4S2A9B1	XRE family transcriptional regulator	NA
UHGV-0106536_45	eggNOG-mapper	1211035.CD30_00180	Cupin domain	NA
UHGV-0106536_45	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0106536_45	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106536_45	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106536_45	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0106536_49	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0106536_49	Structural annotation	PF02767, MF_00317, TIGR00663, COG0592	NA	NA
UHGV-0106536_50	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0106536_50	UniRef90	UniRef90_A0A833P3E4	DNA replication protein DnaD	NA
UHGV-0106536_50	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0106536_50	Structural annotation	PF10771, MF_01177, TIGR01610, COG5529	NA	NA
UHGV-0106536_51	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0106536_51	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0106536_51	UniRef90	UniRef90_A0A6N7XVS6	ATP-binding protein	NA
UHGV-0106536_51	eggNOG-mapper	642492.Clole_0799	Bacterial dnaA protein	NA
UHGV-0106536_51	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0106536_51	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0106536_51	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0106536_52	PHROG	phrog_14105	NA	unknown function
UHGV-0106536_52	UniRef90	UniRef90_UPI001C00F934	pentapeptide repeat-containing protein	NA
UHGV-0106536_52	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0106536_52	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0106536_52	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0106536_52	Structural annotation	PF01469, NF033144	NA	NA