UHGV-0106554

Genome information

Genome length 35,569 bps

CDS count 60

Completeness 79.07% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106554
vOTU ID	vOTU-041880
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_251868
BioSample	SAMEA3708765
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	52.62
Jumbo phage	No

Genome content
Genome length	35,569 bps
GC content	41.07%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.53%
Average CDS length	545.80 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106554_1	UniRef90	UniRef90_A0A3D1FJ61	Phage capsid protein (Fragment)	NA
UHGV-0106554_1	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0106554_1	COG	COG2369	NA	NA
UHGV-0106554_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0106554_2	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0106554_2	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0106554_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0106554_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106554_3	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0106554_3	UniRef90	UniRef90_A0A395X9V4	PBSX family phage terminase large subunit	NA
UHGV-0106554_3	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0106554_3	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0106554_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106554_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106554_3	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0106554_4	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0106554_4	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0106554_4	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0106554_4	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0106554_4	Structural annotation	PF16677	NA	NA
UHGV-0106554_7	PHROG	phrog_2776	NA	unknown function
UHGV-0106554_7	eggNOG-mapper	1298920.KI911353_gene2703	NA	NA
UHGV-0106554_7	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0106554_8	eggNOG-mapper	1235793.C809_02210	NA	NA
UHGV-0106554_10	Structural annotation	PF06107, COG4481	NA	NA
UHGV-0106554_11	PHROG	phrog_20593	NA	unknown function
UHGV-0106554_12	PHROG	phrog_20593	NA	unknown function
UHGV-0106554_15	PHROG	phrog_15198	NA	unknown function
UHGV-0106554_15	UniRef90	UniRef90_A0A373NR41	NA	NA
UHGV-0106554_15	Pfam	PF04448	NA	DUF551
UHGV-0106554_15	Structural annotation	PF04448	NA	NA
UHGV-0106554_16	PHROG	phrog_4601	NA	unknown function
UHGV-0106554_17	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0106554_17	UniRef90	UniRef90_UPI001C0F2DCC	Lar family restriction alleviation protein	NA
UHGV-0106554_17	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0106554_19	Structural annotation	PF04936	NA	NA
UHGV-0106554_20	UniRef90	UniRef90_A0A6L8SWV5	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0106554_20	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0106554_20	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0106554_20	Structural annotation	PF01726, COG0640	NA	NA
UHGV-0106554_22	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0106554_22	UniRef90	UniRef90_UPI001655DAE1	bifunctional DNA primase/polymerase	NA
UHGV-0106554_22	eggNOG-mapper	1235793.C809_02292	Virulence-associated protein E	NA
UHGV-0106554_22	Pfam	PF09250	Bifunctional DNA primase/polymerase, N-terminal	Prim-Pol
UHGV-0106554_22	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0106554_22	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0106554_22	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0106554_22	Structural annotation	PF05272, PF09250, PF08708, MF_00016, NF011296, COG5545	NA	NA
UHGV-0106554_23	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0106554_23	UniRef90	UniRef90_A0A173R9N6	ERCC4 domain-containing protein	NA
UHGV-0106554_23	eggNOG-mapper	476272.RUMHYD_02832	ERCC4 domain	NA
UHGV-0106554_23	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0106554_23	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0106554_23	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0106554_24	PHROG	phrog_18107	NA	unknown function
UHGV-0106554_24	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0106554_24	Structural annotation	PF05037	NA	NA
UHGV-0106554_26	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106554_26	UniRef90	UniRef90_A0A8F2J9K2	ATP-binding protein	NA
UHGV-0106554_26	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0106554_26	Pfam	PF13479	AAA domain	AAA_24
UHGV-0106554_26	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0106554_27	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0106554_28	Structural annotation	NF001645	NA	NA
UHGV-0106554_32	AcrCatalog	cluster_17974	NA	NA
UHGV-0106554_33	PHROG	phrog_6058	NA	unknown function
UHGV-0106554_33	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0106554_35	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0106554_35	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0106554_35	eggNOG-mapper	1235801.C822_00106	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106554_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106554_35	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106554_35	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0106554_36	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0106554_36	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0106554_36	eggNOG-mapper	476272.RUMHYD_03305	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0106554_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106554_36	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0106554_36	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0106554_38	UniRef90	UniRef90_UPI001C0EAFDF	OB-fold putative lipoprotein	NA
UHGV-0106554_38	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0106554_38	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0106554_39	KOfam	K14059	int; integrase	NA
UHGV-0106554_39	PHROG	phrog_1	integrase	integration and excision
UHGV-0106554_39	UniRef90	UniRef90_A0A6L8SXX0	Tyrosine-type recombinase/integrase	NA
UHGV-0106554_39	eggNOG-mapper	1235792.C808_05256	Belongs to the 'phage' integrase family	NA
UHGV-0106554_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0106554_39	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0106554_40	PHROG	phrog_9589	endolysin	lysis
UHGV-0106554_40	UniRef90	UniRef90_A0A6N9LGV5	CHAP domain-containing protein	NA
UHGV-0106554_40	eggNOG-mapper	1123075.AUDP01000020_gene1533	pathogenesis	NA
UHGV-0106554_40	Pfam	PF05257	CHAP domain	CHAP
UHGV-0106554_40	COG	COG3942	Surface antigen	NA
UHGV-0106554_40	Structural annotation	PF08230, PF19087	NA	NA
UHGV-0106554_41	Structural annotation	NF040910	NA	NA
UHGV-0106554_43	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0106554_43	PHROG	phrog_819	tail protein	tail
UHGV-0106554_43	UniRef90	UniRef90_A0A416SLH3	Collagen-like protein	NA
UHGV-0106554_43	eggNOG-mapper	1519439.JPJG01000060_gene1894	NA	NA
UHGV-0106554_43	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0106554_43	Pfam	PF19789	NA	DUF6273
UHGV-0106554_43	COG	COG3827	Cell pole-organizing protein PopZ	NA
UHGV-0106554_43	Structural annotation	PF19789, PF16323, COG2033	NA	NA
UHGV-0106554_44	PHROG	phrog_18444	NA	unknown function
UHGV-0106554_45	PHROG	phrog_6616	tail protein	tail
UHGV-0106554_45	UniRef90	UniRef90_A0A352BLY8	Peptidase S74 domain-containing protein	NA
UHGV-0106554_45	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-0106554_45	Structural annotation	PF05113, PF18432, NF033848, NF011735, COG4379	NA	NA
UHGV-0106554_46	PHROG	phrog_1194	NA	unknown function
UHGV-0106554_46	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0106554_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0106554_47	UniRef90	UniRef90_A0A173R880	Phage-related protein	NA
UHGV-0106554_47	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0106554_47	COG	COG1511	NA	NA
UHGV-0106554_48	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106554_48	UniRef90	UniRef90_UPI000A2DD08F	NUMOD4 domain-containing protein	NA
UHGV-0106554_48	eggNOG-mapper	1206110.L0P6F5_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0106554_48	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0106554_48	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0106554_48	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0106554_48	Structural annotation	PF07463, PF07453	NA	NA
UHGV-0106554_49	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0106554_49	eggNOG-mapper	476272.RUMHYD_01785	phage tail tape measure protein	NA
UHGV-0106554_49	COG	COG1511	NA	NA
UHGV-0106554_49	Structural annotation	PF20155	NA	NA
UHGV-0106554_50	PHROG	phrog_706	NA	unknown function
UHGV-0106554_50	UniRef90	UniRef90_UPI001BAD00AD	Gp15 family bacteriophage protein	NA
UHGV-0106554_50	eggNOG-mapper	411459.RUMOBE_01383	Bacteriophage Gp15 protein	NA
UHGV-0106554_50	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0106554_50	Structural annotation	PF06854	NA	NA
UHGV-0106554_51	PHROG	phrog_11299	NA	unknown function
UHGV-0106554_51	eggNOG-mapper	411459.RUMOBE_01382	NA	NA
UHGV-0106554_51	Structural annotation	PF10666	NA	NA
UHGV-0106554_52	PHROG	phrog_3099	NA	unknown function
UHGV-0106554_52	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0106554_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0106554_53	PHROG	phrog_3266	tail completion	connector
UHGV-0106554_53	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0106554_53	Structural annotation	PF12691	NA	NA
UHGV-0106554_54	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0106554_54	UniRef90	UniRef90_UPI000E4989EB	minor capsid protein	NA
UHGV-0106554_54	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0106554_54	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0106554_54	Structural annotation	PF11114	NA	NA
UHGV-0106554_55	PHROG	phrog_3366	NA	unknown function
UHGV-0106554_55	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0106554_55	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0106554_56	PHROG	phrog_1129	holin	lysis
UHGV-0106554_56	UniRef90	UniRef90_A0A395X7B2	Enolase	NA
UHGV-0106554_56	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0106554_56	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0106554_56	Structural annotation	PF06946	NA	NA
UHGV-0106554_57	PHROG	phrog_774	NA	unknown function
UHGV-0106554_57	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0106554_59	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0106554_59	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0106554_60	PHROG	phrog_544	major head protein	head and packaging
UHGV-0106554_60	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0106554_60	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0106554_60	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C