UHGV-0106589

Genome information

Genome length 42,200 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9791

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106589
vOTU ID	vOTU-045543
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_243470
BioSample	SAMEA3708731
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9791
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.98
Jumbo phage	No

Genome content
Genome length	42,200 bps
GC content	45.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.70%
Average CDS length	700.09 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106589_1	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0106589_1	PHROG	phrog_9764	NA	unknown function
UHGV-0106589_1	UniRef90	UniRef90_UPI0006D263F7	type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0106589_1	eggNOG-mapper	679200.HMPREF9333_02066	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0106589_1	PADLOC	AbiQ	AbiQ	Abi
UHGV-0106589_1	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0106589_1	Structural annotation	PF13958	NA	NA
UHGV-0106589_2	eggNOG-mapper	431943.CKL_1820	NA	NA
UHGV-0106589_2	Structural annotation	PF19448	NA	NA
UHGV-0106589_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0106589_3	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0106589_3	UniRef90	UniRef90_UPI00067EDF4A	XRE family transcriptional regulator	NA
UHGV-0106589_3	eggNOG-mapper	431943.CKL_1821	IrrE N-terminal-like domain	NA
UHGV-0106589_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106589_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0106589_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106589_3	Structural annotation	PF06114, PF01381, MF_00584, NF038139, COG2856, COG1476	NA	NA
UHGV-0106589_4	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0106589_4	PHROG	phrog_3088	amidase	lysis
UHGV-0106589_4	UniRef90	UniRef90_A0A417U0P9	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0106589_4	eggNOG-mapper	1151292.QEW_0991	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0106589_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0106589_4	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0106589_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0106589_4	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-0106589_5	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0106589_6	PHROG	phrog_16164	NA	unknown function
UHGV-0106589_6	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0106589_6	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0106589_8	PHROG	phrog_443	holin	lysis
UHGV-0106589_8	UniRef90	UniRef90_UPI001EE0823A	holin	NA
UHGV-0106589_8	eggNOG-mapper	742733.HMPREF9469_01797	Putative lactococcus lactis phage r1t holin	NA
UHGV-0106589_8	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0106589_8	Structural annotation	PF16945	NA	NA
UHGV-0106589_9	PHROG	phrog_937	hemolysin	other
UHGV-0106589_9	eggNOG-mapper	1469948.JPNB01000002_gene3854	NA	NA
UHGV-0106589_10	Structural annotation	PF21253, NF038128, COG5156	NA	NA
UHGV-0106589_11	PHROG	phrog_28171	NA	unknown function
UHGV-0106589_11	eggNOG-mapper	411902.CLOBOL_00122	NA	NA
UHGV-0106589_12	PHROG	phrog_18725	NA	unknown function
UHGV-0106589_12	eggNOG-mapper	411902.CLOBOL_00123	NA	NA
UHGV-0106589_13	PHROG	phrog_13879	NA	unknown function
UHGV-0106589_13	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0106589_13	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-0106589_14	PHROG	phrog_1194	NA	unknown function
UHGV-0106589_14	eggNOG-mapper	411902.CLOBOL_00125	NA	NA
UHGV-0106589_14	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0106589_15	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0106589_15	eggNOG-mapper	411902.CLOBOL_00126	NA	NA
UHGV-0106589_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0106589_16	PHROG	phrog_706	NA	unknown function
UHGV-0106589_16	UniRef90	UniRef90_A0A0F0CE18	Bacteriophage Gp15 protein	NA
UHGV-0106589_16	eggNOG-mapper	411902.CLOBOL_00127	NA	NA
UHGV-0106589_16	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0106589_16	Structural annotation	PF06854	NA	NA
UHGV-0106589_17	PHROG	phrog_11299	NA	unknown function
UHGV-0106589_17	eggNOG-mapper	411902.CLOBOL_00128	NA	NA
UHGV-0106589_17	Structural annotation	PF10666	NA	NA
UHGV-0106589_18	PHROG	phrog_3099	NA	unknown function
UHGV-0106589_18	eggNOG-mapper	411902.CLOBOL_00129	NA	NA
UHGV-0106589_18	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0106589_19	PHROG	phrog_3266	tail completion	connector
UHGV-0106589_19	eggNOG-mapper	1304866.K413DRAFT_3042	NA	NA
UHGV-0106589_19	Structural annotation	PF20765	NA	NA
UHGV-0106589_20	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0106589_20	UniRef90	UniRef90_UPI0015948E32	minor capsid protein	NA
UHGV-0106589_20	eggNOG-mapper	411902.CLOBOL_00131	Minor capsid protein	NA
UHGV-0106589_20	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0106589_20	Structural annotation	PF11114	NA	NA
UHGV-0106589_21	PHROG	phrog_3366	NA	unknown function
UHGV-0106589_21	eggNOG-mapper	411902.CLOBOL_00132	NA	NA
UHGV-0106589_21	Pfam	PF20536	NA	DUF6751
UHGV-0106589_21	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0106589_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0106589_22	eggNOG-mapper	411902.CLOBOL_00133	NA	NA
UHGV-0106589_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0106589_23	UniRef90	UniRef90_UPI001592C546	phage major capsid protein	NA
UHGV-0106589_23	eggNOG-mapper	411902.CLOBOL_00134	Phage capsid family	NA
UHGV-0106589_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0106589_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0106589_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0106589_23	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0106589_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0106589_24	UniRef90	UniRef90_UPI001592F515	phage scaffolding protein	NA
UHGV-0106589_24	eggNOG-mapper	411902.CLOBOL_00135	COG NOG36366 non supervised orthologous group	NA
UHGV-0106589_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0106589_24	Structural annotation	PF06810	NA	NA
UHGV-0106589_25	PHROG	phrog_918	NA	unknown function
UHGV-0106589_25	UniRef90	UniRef90_UPI001CF89D06	NA	NA
UHGV-0106589_25	eggNOG-mapper	298338.Q5ULN6_9CAUD	NA	NA
UHGV-0106589_25	Pfam	PF19791	NA	DUF6275
UHGV-0106589_25	Structural annotation	PF19791	NA	NA
UHGV-0106589_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0106589_27	UniRef90	UniRef90_UPI001593C099	minor capsid protein	NA
UHGV-0106589_27	eggNOG-mapper	411902.CLOBOL_00137	NA	NA
UHGV-0106589_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0106589_27	COG	COG2369	NA	NA
UHGV-0106589_27	Structural annotation	PF06152, PF04002	NA	NA
UHGV-0106589_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0106589_28	UniRef90	UniRef90_UPI001594278A	phage portal protein	NA
UHGV-0106589_28	eggNOG-mapper	411902.CLOBOL_00138	NA	NA
UHGV-0106589_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0106589_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0106589_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106589_29	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0106589_29	UniRef90	UniRef90_A0A352BM03	PBSX family phage terminase large subunit	NA
UHGV-0106589_29	eggNOG-mapper	411902.CLOBOL_00139	Phage terminase, large subunit, PBSX family	NA
UHGV-0106589_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106589_29	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0106589_30	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0106589_30	UniRef90	UniRef90_A0A174E7N9	Phage terminase small subunit	NA
UHGV-0106589_30	eggNOG-mapper	411902.CLOBOL_00140	DNA packaging	NA
UHGV-0106589_30	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0106589_30	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0106589_30	COG	COG5484	NA	NA
UHGV-0106589_30	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0106589_32	UniRef90	UniRef90_UPI00131E8D48	NA	NA
UHGV-0106589_32	eggNOG-mapper	693746.OBV_43160	NA	NA
UHGV-0106589_32	Pfam	PF10987	NA	DUF2806
UHGV-0106589_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0106589_33	UniRef90	UniRef90_UPI000836D5C7	RNA polymerase subunit sigma-70	NA
UHGV-0106589_33	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0106589_33	Structural annotation	PF02996	NA	NA
UHGV-0106589_34	PHROG	phrog_25231	NA	unknown function
UHGV-0106589_34	Structural annotation	PF04936	NA	NA
UHGV-0106589_35	PHROG	phrog_6568	NA	unknown function
UHGV-0106589_35	eggNOG-mapper	742740.HMPREF9474_02283	NA	NA
UHGV-0106589_36	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0106589_36	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0106589_36	UniRef90	UniRef90_UPI0015948491	site-specific DNA-methyltransferase	NA
UHGV-0106589_36	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0106589_36	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0106589_36	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0106589_36	COG	COG0863	DNA modification methylase	NA
UHGV-0106589_36	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0106589_37	UniRef90	UniRef90_UPI001594A542	NA	NA
UHGV-0106589_37	eggNOG-mapper	742733.HMPREF9469_00921	NA	NA
UHGV-0106589_37	Pfam	PF04448	NA	DUF551
UHGV-0106589_37	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0106589_38	Structural annotation	PF13248	NA	NA
UHGV-0106589_39	PHROG	phrog_15077	NA	unknown function
UHGV-0106589_39	eggNOG-mapper	1235800.C819_02581	NA	NA
UHGV-0106589_39	Structural annotation	NF038070	NA	NA
UHGV-0106589_40	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0106589_40	UniRef90	UniRef90_UPI001D090F0C	conserved phage C-terminal domain-containing protein	NA
UHGV-0106589_40	eggNOG-mapper	742740.HMPREF9474_03492	DnaD domain protein	NA
UHGV-0106589_40	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0106589_40	Structural annotation	PF03444, MF_01911, TIGR01610, COG5529	NA	NA
UHGV-0106589_41	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0106589_41	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0106589_42	PHROG	phrog_7566	NA	unknown function
UHGV-0106589_42	UniRef90	UniRef90_UPI0015935946	phosphoenolpyruvate carboxykinase	NA
UHGV-0106589_42	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0106589_43	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0106589_43	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0106589_43	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0106589_44	PHROG	phrog_14970	NA	unknown function
UHGV-0106589_44	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0106589_44	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0106589_44	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0106589_45	eggNOG-mapper	33035.JPJF01000135_gene5083	NA	NA
UHGV-0106589_49	UniRef90	UniRef90_UPI001594B79E	helix-turn-helix domain-containing protein	NA
UHGV-0106589_49	eggNOG-mapper	478749.BRYFOR_07577	Helix-turn-helix domain	NA
UHGV-0106589_49	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0106589_49	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0106589_51	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0106589_51	UniRef90	UniRef90_UPI0015940369	ORF6C domain-containing protein	NA
UHGV-0106589_51	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0106589_51	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0106589_51	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0106589_51	COG	COG3617	Prophage antirepressor	NA
UHGV-0106589_51	Structural annotation	PF10552, PF02498, NF033622, COG3617	NA	NA
UHGV-0106589_52	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0106589_52	UniRef90	UniRef90_A0A3A9CUH5	XRE family transcriptional regulator	NA
UHGV-0106589_52	eggNOG-mapper	246199.CUS_5910	NA	NA
UHGV-0106589_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106589_52	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0106589_53	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0106589_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0106589_53	UniRef90	UniRef90_R5F684	HTH cro/C1-type domain-containing protein	NA
UHGV-0106589_53	eggNOG-mapper	97139.C824_00060	Peptidase S24-like	NA
UHGV-0106589_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106589_53	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0106589_53	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0106589_53	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, NF041951, COG1396, COG1974	NA	NA
UHGV-0106589_54	UniRef90	UniRef90_R0D377	SmpA_OmlA domain-containing protein	NA
UHGV-0106589_55	KOfam	K14059	int; integrase	NA
UHGV-0106589_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0106589_55	UniRef90	UniRef90_UPI0015935AA5	site-specific integrase	NA
UHGV-0106589_55	eggNOG-mapper	536233.CLO_0855	Arm DNA-binding domain	NA
UHGV-0106589_55	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0106589_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106589_55	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0106589_55	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA