UHGV-0106594

Genome information

Genome length 29,989 bps

CDS count 36

Completeness 80.11% (medium-quality)

geNomad score 0.9770

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106594
vOTU ID	vOTU-042405
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244565
BioSample	SAMEA3708891
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.11% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9770
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.61
Jumbo phage	No

Genome content
Genome length	29,989 bps
GC content	51.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	36
CDS density	89.31%
Average CDS length	746.42 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106594_1	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-0106594_1	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-0106594_1	UniRef90	UniRef90_A0A1Q8Z4K0	Damage-inducible protein DinI	NA
UHGV-0106594_1	eggNOG-mapper	1115653.S5MQI1_9CAUD	DinI-like family	NA
UHGV-0106594_1	Pfam	PF06183	DinI-like family	DinI
UHGV-0106594_2	PHROG	phrog_3893	NA	unknown function
UHGV-0106594_2	eggNOG-mapper	571.MC52_15285	NA	NA
UHGV-0106594_3	KOfam	K21528	gin; serine recombinase [EC:3.1.22.- 6.5.1.-]	NA
UHGV-0106594_3	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0106594_3	UniRef90	UniRef90_A0A486D025	DNA-invertase hin	NA
UHGV-0106594_3	eggNOG-mapper	571.MC52_01310	Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0106594_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0106594_3	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0106594_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0106594_3	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0106594_7	PHROG	phrog_18370	NA	unknown function
UHGV-0106594_7	UniRef90	UniRef90_D4P7M2	Gp004	NA
UHGV-0106594_8	PHROG	phrog_9750	NA	unknown function
UHGV-0106594_8	UniRef90	UniRef90_A0A7H4S5K3	Putative prophage endo-N-neuraminidase	NA
UHGV-0106594_8	eggNOG-mapper	571.MC52_01315	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0106594_8	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0106594_8	Structural annotation	PF04311, COG2845	NA	NA
UHGV-0106594_9	PHROG	phrog_469	tail protein	tail
UHGV-0106594_9	UniRef90	UniRef90_A0A1D8JSQ6	Kinase	NA
UHGV-0106594_9	eggNOG-mapper	571.MC52_01330	cellulase activity	NA
UHGV-0106594_9	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0106594_9	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0106594_9	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0106594_9	Structural annotation	PF13550, NF040662, TIGR01683, COG4733, COG2104	NA	NA
UHGV-0106594_10	UniRef90	UniRef90_A0A1D8JSR0	Nitrite transporter	NA
UHGV-0106594_10	eggNOG-mapper	573.JG24_11055	NA	NA
UHGV-0106594_10	Structural annotation	TIGR02219	NA	NA
UHGV-0106594_11	PHROG	phrog_396	minor tail protein	tail
UHGV-0106594_11	UniRef90	UniRef90_A0A168QM81	ArsR family transcriptional regulator	NA
UHGV-0106594_11	eggNOG-mapper	573.JG24_11050	NA	NA
UHGV-0106594_11	Pfam	PF08875	NA	DUF1833
UHGV-0106594_11	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0106594_12	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0106594_12	UniRef90	UniRef90_A0A163VZJ0	Membrane protein	NA
UHGV-0106594_12	eggNOG-mapper	571.MC52_01345	NA	NA
UHGV-0106594_12	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0106594_13	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0106594_13	UniRef90	UniRef90_A0A378AB71	Phage tail length tape-measure protein 1	NA
UHGV-0106594_13	eggNOG-mapper	571.MC52_01350	tape measure protein	NA
UHGV-0106594_13	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0106594_13	Pfam	PF06120	Tail length tape measure protein	Phage_HK97_TLTM
UHGV-0106594_13	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0106594_13	NCBIFam	TIGR01541.1	phage tail tape measure protein	NA
UHGV-0106594_13	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0106594_13	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0106594_14	PHROG	phrog_6823	NA	unknown function
UHGV-0106594_14	eggNOG-mapper	1115515.EV102420_38_00020	NA	NA
UHGV-0106594_15	PHROG	phrog_14766	tail protein	tail
UHGV-0106594_15	UniRef90	UniRef90_UPI00073C23C8	NA	NA
UHGV-0106594_15	eggNOG-mapper	573.JG24_11030	NA	NA
UHGV-0106594_15	Pfam	PF13227	NA	DUF4035
UHGV-0106594_15	Structural annotation	PF06223, TIGR01715	NA	NA
UHGV-0106594_16	PHROG	phrog_14766	tail protein	tail
UHGV-0106594_16	UniRef90	UniRef90_A0A443WE36	Phage tail protein	NA
UHGV-0106594_16	eggNOG-mapper	573.JG24_11025	tail assembly chaperone	NA
UHGV-0106594_16	Pfam	PF06222	Phage tail assembly chaperone	Phage_TAC_1
UHGV-0106594_16	Structural annotation	PF06222	NA	NA
UHGV-0106594_17	PHROG	phrog_158	major tail protein	tail
UHGV-0106594_17	UniRef90	UniRef90_A0A4P1AST2	Ig-like domain-containing protein	NA
UHGV-0106594_17	eggNOG-mapper	573.JG24_11020	NA	NA
UHGV-0106594_17	Pfam	PF13895	Immunoglobulin domain	Ig_2
UHGV-0106594_17	Structural annotation	PF16461, PF13895, MF_04116, TIGR02126, COG5437	NA	NA
UHGV-0106594_18	PHROG	phrog_347	tail terminator	connector
UHGV-0106594_18	UniRef90	UniRef90_UPI0012B9FC5B	NA	NA
UHGV-0106594_18	eggNOG-mapper	573.JG24_11015	Structural component (Phage or Prophage Related)	NA
UHGV-0106594_18	Structural annotation	PF11367	NA	NA
UHGV-0106594_19	PHROG	phrog_23409	NA	unknown function
UHGV-0106594_19	UniRef90	UniRef90_UPI0007CBB79D	HK97 gp10 family phage protein	NA
UHGV-0106594_19	eggNOG-mapper	573.JG24_11010	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0106594_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0106594_19	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0106594_19	Structural annotation	TIGR01725	NA	NA
UHGV-0106594_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-0106594_20	UniRef90	UniRef90_A0A170RNN6	Head-tail adaptor protein	NA
UHGV-0106594_20	eggNOG-mapper	35703.DQ02_21675	head-tail adaptor	NA
UHGV-0106594_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0106594_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0106594_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0106594_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0106594_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0106594_21	UniRef90	UniRef90_A0A447RK36	Phage gp6-like head-tail connector protein	NA
UHGV-0106594_21	eggNOG-mapper	35703.DQ02_21680	Phage gp6-like head-tail connector protein	NA
UHGV-0106594_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0106594_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0106594_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0106594_22	PHROG	phrog_5463	NA	unknown function
UHGV-0106594_22	eggNOG-mapper	1111728.ATYS01000061_gene462	NA	NA
UHGV-0106594_22	Structural annotation	PF01281	NA	NA
UHGV-0106594_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0106594_23	UniRef90	UniRef90_A0A482J371	Major capsid protein	NA
UHGV-0106594_23	eggNOG-mapper	1147150.K7PM57_9CAUD	peptidase activity	NA
UHGV-0106594_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0106594_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0106594_23	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0106594_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0106594_24	PHROG	phrog_1684	head maturation protease	head and packaging
UHGV-0106594_24	UniRef90	UniRef90_A0A855F906	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0106594_24	eggNOG-mapper	35703.DQ02_24250	Clp protease	NA
UHGV-0106594_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0106594_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0106594_24	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0106594_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0106594_25	UniRef90	UniRef90_UPI001F0F417F	phage portal protein	NA
UHGV-0106594_25	eggNOG-mapper	35703.DQ02_24245	portal protein	NA
UHGV-0106594_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0106594_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0106594_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0106594_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0106594_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0106594_26	UniRef90	UniRef90_A0A377ZYG0	Phage terminase large subunit	NA
UHGV-0106594_26	eggNOG-mapper	35703.DQ02_24240	terminase	NA
UHGV-0106594_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0106594_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0106594_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0106594_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0106594_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0106594_27	UniRef90	UniRef90_A0A377ZY98	Phage terminase small subunit	NA
UHGV-0106594_27	eggNOG-mapper	35703.DQ02_24235	phage terminase small subunit	NA
UHGV-0106594_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0106594_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0106594_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0106594_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0106594_28	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106594_28	UniRef90	UniRef90_A0A2X4YRT2	HNH endonuclease	NA
UHGV-0106594_28	eggNOG-mapper	573.JG24_10965	HNH nucleases	NA
UHGV-0106594_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0106594_29	eggNOG-mapper	35703.DQ02_24225	NA	NA
UHGV-0106594_30	Pfam	PF13488	Glycine zipper	Gly-zipper_Omp
UHGV-0106594_31	PHROG	phrog_571	NA	unknown function
UHGV-0106594_31	UniRef90	UniRef90_UPI001BA69633	NA	NA
UHGV-0106594_31	eggNOG-mapper	1028307.EAE_21105	NA	NA
UHGV-0106594_31	Pfam	PF10834	NA	DUF2560
UHGV-0106594_32	PHROG	phrog_7679	NA	unknown function
UHGV-0106594_33	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0106594_33	eggNOG-mapper	571.MC52_01455	NA	NA
UHGV-0106594_34	PHROG	phrog_1356	holin	lysis
UHGV-0106594_34	UniRef90	UniRef90_A0A0M2KDI3	Membrane protein	NA
UHGV-0106594_34	eggNOG-mapper	1484158.PSNIH1_09125	NA	NA
UHGV-0106594_35	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0106594_35	PHROG	phrog_12853	NA	unknown function
UHGV-0106594_35	UniRef90	UniRef90_A0A2A5MEF5	PG_binding_3 domain-containing protein	NA
UHGV-0106594_35	eggNOG-mapper	393305.YE1815	secretion activating protein	NA
UHGV-0106594_35	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0106594_35	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0106594_35	COG	COG3926	Lysozyme family protein	NA
UHGV-0106594_35	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0106594_36	PHROG	phrog_785	holin	lysis
UHGV-0106594_36	UniRef90	UniRef90_A0A330YPJ8	Drug/metabolite transporter (DMT) superfamily permease	NA
UHGV-0106594_36	eggNOG-mapper	155864.EDL933_1818	LydA holin phage, holin superfamily III	NA
UHGV-0106594_36	Pfam	PF16083	LydA holin phage, holin superfamily III	Phage_holin_3_3
UHGV-0106594_36	Structural annotation	PF16083	NA	NA