UHGV-0106600

Genome information

Genome length 20,690 bps

CDS count 34

Completeness 54.81% (medium-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106600
vOTU ID	vOTU-042406
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252489
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	54.81% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.74
Jumbo phage	No

Genome content
Genome length	20,690 bps
GC content	42.85%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.35%
Average CDS length	555.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106600_1	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0106600_1	UniRef90	UniRef90_A0A1C5UIX2	Phage minor capsid protein 2	NA
UHGV-0106600_1	eggNOG-mapper	411461.DORFOR_00748	NA	NA
UHGV-0106600_1	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0106600_1	COG	COG2369	NA	NA
UHGV-0106600_1	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0106600_2	PHROG	phrog_533	portal protein	head and packaging
UHGV-0106600_2	UniRef90	UniRef90_A0A415D8P0	Phage capsid protein	NA
UHGV-0106600_2	eggNOG-mapper	742765.HMPREF9457_02120	NA	NA
UHGV-0106600_2	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0106600_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106600_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0106600_3	UniRef90	UniRef90_A0A415D8B5	PBSX family phage terminase large subunit	NA
UHGV-0106600_3	eggNOG-mapper	742765.HMPREF9457_02119	Terminase-like family	NA
UHGV-0106600_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0106600_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106600_3	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0106600_4	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0106600_4	UniRef90	UniRef90_UPI001F487344	DNA-packaging protein	NA
UHGV-0106600_4	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0106600_4	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0106600_4	Structural annotation	PF16677	NA	NA
UHGV-0106600_6	PHROG	phrog_8680	NA	unknown function
UHGV-0106600_6	UniRef90	UniRef90_A0A415D8N8	NA	NA
UHGV-0106600_6	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0106600_6	Pfam	PF14386	NA	DUF4417
UHGV-0106600_6	Structural annotation	PF14386	NA	NA
UHGV-0106600_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0106600_7	UniRef90	UniRef90_A0A415D8G2	Sigma70_r4 domain-containing protein	NA
UHGV-0106600_7	eggNOG-mapper	1232453.BAIF02000011_gene3350	NA	NA
UHGV-0106600_7	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0106600_7	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0106600_8	PHROG	phrog_7024	NA	unknown function
UHGV-0106600_8	eggNOG-mapper	1256908.HMPREF0373_00784	NA	NA
UHGV-0106600_10	PHROG	phrog_15077	NA	unknown function
UHGV-0106600_10	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0106600_13	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0106600_14	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0106600_14	UniRef90	UniRef90_UPI00189A61B2	Lar family restriction alleviation protein	NA
UHGV-0106600_15	PHROG	phrog_15198	NA	unknown function
UHGV-0106600_15	UniRef90	UniRef90_UPI001D046CFA	NA	NA
UHGV-0106600_15	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0106600_15	Pfam	PF04448	NA	DUF551
UHGV-0106600_17	eggNOG-mapper	1235792.C808_05406	NA	NA
UHGV-0106600_17	Structural annotation	MF_00773, NF041909, COG2888	NA	NA
UHGV-0106600_18	PHROG	phrog_23374	NA	unknown function
UHGV-0106600_19	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0106600_19	UniRef90	UniRef90_A0A373SU28	NA	NA
UHGV-0106600_19	eggNOG-mapper	411460.RUMTOR_02070	NA	NA
UHGV-0106600_19	Pfam	PF06048	NA	DUF927
UHGV-0106600_19	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0106600_19	COG	COG5519	NA	NA
UHGV-0106600_19	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0106600_20	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0106600_20	PHROG	phrog_11992	NA	unknown function
UHGV-0106600_20	UniRef90	UniRef90_A0A373STX8	DNA primase	NA
UHGV-0106600_20	eggNOG-mapper	1298920.KI911353_gene4867	CHC2 zinc finger	NA
UHGV-0106600_20	PADLOC	drt-UG29	DRT	DRT
UHGV-0106600_20	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0106600_20	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0106600_20	Structural annotation	PF01807	NA	NA
UHGV-0106600_21	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0106600_21	UniRef90	UniRef90_A0A391NZM9	ERCC4 domain-containing protein	NA
UHGV-0106600_21	eggNOG-mapper	1256908.HMPREF0373_00660	NA	NA
UHGV-0106600_21	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0106600_21	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0106600_22	PHROG	phrog_18107	NA	unknown function
UHGV-0106600_22	eggNOG-mapper	1256908.HMPREF0373_00659	NA	NA
UHGV-0106600_22	Structural annotation	PF05037	NA	NA
UHGV-0106600_23	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106600_23	UniRef90	UniRef90_A0A1C5SND3	AAA domain-containing protein	NA
UHGV-0106600_23	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0106600_23	Pfam	PF13479	AAA domain	AAA_24
UHGV-0106600_23	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0106600_24	UniRef90	UniRef90_R6RDX0	Arginyl-tRNA synthetase	NA
UHGV-0106600_25	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0106600_25	UniRef90	UniRef90_A0A564SBZ1	Siphovirus Gp157	NA
UHGV-0106600_25	eggNOG-mapper	1256908.HMPREF0373_00657	Siphovirus Gp157	NA
UHGV-0106600_25	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0106600_25	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0106600_27	PHROG	phrog_7964	NA	unknown function
UHGV-0106600_27	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0106600_27	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0106600_27	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0106600_27	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0106600_29	UniRef90	UniRef90_A0A3E4LWT8	HTH psq-type domain-containing protein	NA
UHGV-0106600_29	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-0106600_29	Structural annotation	PF21291, MF_00535, NF007257, COG3655	NA	NA
UHGV-0106600_30	PHROG	phrog_18248	transcriptional regulator	transcription regulation
UHGV-0106600_30	UniRef90	UniRef90_A0A414S2U7	XRE family transcriptional regulator	NA
UHGV-0106600_30	eggNOG-mapper	12417.Q9T1J3_9CAUD	sequence-specific DNA binding	NA
UHGV-0106600_30	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0106600_30	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0106600_31	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0106600_31	UniRef90	UniRef90_UPI0013566F6C	helix-turn-helix transcriptional regulator	NA
UHGV-0106600_31	eggNOG-mapper	476272.RUMHYD_01734	sequence-specific DNA binding	NA
UHGV-0106600_31	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0106600_31	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0106600_32	PHROG	phrog_87	metallo-protease	other
UHGV-0106600_32	UniRef90	UniRef90_A0A414P9K5	Peptidase_M78 domain-containing protein	NA
UHGV-0106600_32	eggNOG-mapper	742723.HMPREF9477_00938	Zn peptidase	NA
UHGV-0106600_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0106600_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0106600_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0106600_33	PHROG	phrog_1847	NA	unknown function
UHGV-0106600_33	UniRef90	UniRef90_UPI001D04F48E	GIY-YIG nuclease family protein	NA
UHGV-0106600_33	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0106600_33	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0106600_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0106600_33	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0106600_34	KOfam	K14059	int; integrase	NA
UHGV-0106600_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0106600_34	UniRef90	UniRef90_A0A3E4LWT3	Site-specific integrase	NA
UHGV-0106600_34	eggNOG-mapper	610130.Closa_1360	Belongs to the 'phage' integrase family	NA
UHGV-0106600_34	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0106600_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106600_34	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0106600_34	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA