UHGV-0106677

Genome information

Genome length 15,835 bps

CDS count 17

Completeness 82.30% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106677
vOTU ID	vOTU-025321
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_268171
BioSample	SAMEA3879549
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.30% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.95
Jumbo phage	No

Genome content
Genome length	15,835 bps
GC content	42.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	17
CDS density	90.96%
Average CDS length	851.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106677_1	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0106677_1	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0106677_1	UniRef90	UniRef90_UPI001C0E8FB7	site-specific DNA-methyltransferase	NA
UHGV-0106677_1	eggNOG-mapper	536233.CLO_1816	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0106677_1	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0106677_1	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0106677_1	COG	COG0863	DNA modification methylase	NA
UHGV-0106677_1	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0106677_2	PHROG	phrog_2150	terminase	head and packaging
UHGV-0106677_2	UniRef90	UniRef90_A0A843GSD8	Phage DNA encapsidation protein	NA
UHGV-0106677_2	eggNOG-mapper	10756.PKG16_BPPH2	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0106677_2	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0106677_2	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0106677_3	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0106677_3	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0106677_3	UniRef90	UniRef90_A0A843HUC7	DNA-directed DNA polymerase	NA
UHGV-0106677_3	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0106677_3	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0106677_3	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0106677_5	Pfam	PF04026	SpoVG	SpoVG
UHGV-0106677_5	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0106677_8	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0106677_8	UniRef90	UniRef90_UPI0006A41431	DNA cytosine methyltransferase	NA
UHGV-0106677_8	eggNOG-mapper	1235790.C805_00032	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0106677_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0106677_8	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0106677_10	Structural annotation	PF16532, NF040827	NA	NA
UHGV-0106677_11	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0106677_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0106677_12	UniRef90	UniRef90_Q9FZW5	Head-tail connector (Portal protein)	NA
UHGV-0106677_12	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0106677_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0106677_12	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0106677_13	PHROG	phrog_2248	tail protein	tail
UHGV-0106677_13	UniRef90	UniRef90_A0A843GTI5	Caud_tail_N domain-containing protein	NA
UHGV-0106677_13	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0106677_13	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0106677_13	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0106677_13	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0106677_14	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0106677_14	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0106677_14	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0106677_14	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0106677_14	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0106677_16	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0106677_16	PHROG	phrog_15001	endolysin	lysis
UHGV-0106677_16	UniRef90	UniRef90_A0A2V2E834	Amidase	NA
UHGV-0106677_16	eggNOG-mapper	1122143.AUEG01000001_gene542	Sporulation related domain	NA
UHGV-0106677_16	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0106677_16	Pfam	PF05036	SPOR domain	SPOR
UHGV-0106677_16	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0106677_16	Structural annotation	PF01510, NF008758, COG5632	NA	NA
UHGV-0106677_17	PHROG	phrog_4898	holin	lysis