UHGV-0106979

Genome information

Genome length 35,685 bps

CDS count 51

Completeness 89.40% (medium-quality)

geNomad score 0.9783

Prediction confidence Confident

Genome information
Genome ID	UHGV-0106979
vOTU ID	vOTU-032543
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_247673
BioSample	SAMEA3708801
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9783
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.61
Jumbo phage	No

Genome content
Genome length	35,685 bps
GC content	43.09%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	94.08%
Average CDS length	662.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0106979_1	PHROG	phrog_6616	tail protein	tail
UHGV-0106979_1	UniRef90	UniRef90_UPI001D0763AB	tail fiber domain-containing protein	NA
UHGV-0106979_1	eggNOG-mapper	1262449.CP6013_3213	Phage minor structural protein	NA
UHGV-0106979_1	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0106979_1	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0106979_2	PHROG	phrog_1194	NA	unknown function
UHGV-0106979_2	UniRef90	UniRef90_R5Z572	Putative phage protein	NA
UHGV-0106979_2	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0106979_2	Pfam	PF20458	NA	DUF6711
UHGV-0106979_2	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0106979_3	KOfam	K10866	RAD50; DNA repair protein RAD50 [EC:3.6.-.-]	NA
UHGV-0106979_3	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0106979_3	UniRef90	UniRef90_A0A173W8C4	Chromosome segregation protein	NA
UHGV-0106979_3	eggNOG-mapper	397290.C810_01419	Transglycosylase SLT domain	NA
UHGV-0106979_3	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0106979_5	Structural annotation	PF11836	NA	NA
UHGV-0106979_6	PHROG	phrog_158	major tail protein	tail
UHGV-0106979_6	UniRef90	UniRef90_A0A173W733	Phage tail protein	NA
UHGV-0106979_6	eggNOG-mapper	1209989.TepiRe1_1157	Phage tail tube protein, TTP	NA
UHGV-0106979_6	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0106979_6	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0106979_7	Structural annotation	PF05657	NA	NA
UHGV-0106979_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0106979_8	UniRef90	UniRef90_A0A173W5Z4	Phage protein, HK97 gp10 family	NA
UHGV-0106979_8	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0106979_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0106979_8	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0106979_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0106979_9	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0106979_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0106979_10	Structural annotation	PF05135	NA	NA
UHGV-0106979_12	PHROG	phrog_267	major head protein	head and packaging
UHGV-0106979_12	UniRef90	UniRef90_A0A173W8U9	p22 coat protein-gene protein 5	NA
UHGV-0106979_12	eggNOG-mapper	1235800.C819_00485	P22 coat protein-protein 5 domain protein	NA
UHGV-0106979_12	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0106979_13	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0106979_13	UniRef90	UniRef90_UPI00189A8A5B	NA	NA
UHGV-0106979_13	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-0106979_13	Pfam	PF14265	NA	DUF4355
UHGV-0106979_14	PHROG	phrog_872	NA	unknown function
UHGV-0106979_14	UniRef90	UniRef90_A0A413P9Z7	NA	NA
UHGV-0106979_14	eggNOG-mapper	749222.Nitsa_1194	NA	NA
UHGV-0106979_14	Pfam	PF11195	NA	DUF2829
UHGV-0106979_14	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0106979_14	Structural annotation	PF11195	NA	NA
UHGV-0106979_15	UniRef90	UniRef90_A0A1M6RFQ4	Aspartyl protease	NA
UHGV-0106979_15	Pfam	PF13650	Aspartyl protease	Asp_protease_2
UHGV-0106979_15	Structural annotation	PF13650, TIGR02281, COG5550	NA	NA
UHGV-0106979_17	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0106979_17	UniRef90	UniRef90_A0A6N9K285	Phage_Mu_F domain-containing protein	NA
UHGV-0106979_17	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-0106979_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0106979_17	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0106979_17	COG	COG2369	NA	NA
UHGV-0106979_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0106979_18	UniRef90	UniRef90_A0A173W966	Phage portal protein, SPP1 family	NA
UHGV-0106979_18	eggNOG-mapper	877414.ATWA01000001_gene907	Phage portal protein, SPP1 family	NA
UHGV-0106979_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0106979_18	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0106979_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0106979_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0106979_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0106979_19	UniRef90	UniRef90_A0A173W6A0	Phage terminase, large subunit, PBSX family	NA
UHGV-0106979_19	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-0106979_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0106979_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0106979_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0106979_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0106979_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0106979_20	PHROG	phrog_2412	NA	unknown function
UHGV-0106979_20	UniRef90	UniRef90_UPI001C38E948	KGG domain-containing protein	NA
UHGV-0106979_20	eggNOG-mapper	1125712.HMPREF1316_1524	NA	NA
UHGV-0106979_20	Pfam	PF10685	Stress-induced bacterial acidophilic repeat motif	KGG
UHGV-0106979_21	PHROG	phrog_5057	NA	unknown function
UHGV-0106979_23	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0106979_23	UniRef90	UniRef90_A0A173W6N8	ParB-like nuclease domain	NA
UHGV-0106979_23	eggNOG-mapper	936154.STP_1604	NA	NA
UHGV-0106979_23	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0106979_23	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0106979_23	Pfam	PF14386	NA	DUF4417
UHGV-0106979_23	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0106979_23	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0106979_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0106979_25	UniRef90	UniRef90_A0A412EN86	NA	NA
UHGV-0106979_25	eggNOG-mapper	97138.C820_00221	sigma factor activity	NA
UHGV-0106979_25	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0106979_25	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0106979_26	PHROG	phrog_17690	NA	unknown function
UHGV-0106979_26	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0106979_26	eggNOG-mapper	33035.JPJF01000107_gene432	NA	NA
UHGV-0106979_28	PHROG	phrog_8684	NA	unknown function
UHGV-0106979_28	UniRef90	UniRef90_A0A3A6J9I1	YopX domain-containing protein	NA
UHGV-0106979_28	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0106979_28	Pfam	PF09643	YopX protein	YopX
UHGV-0106979_28	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0106979_28	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0106979_33	Structural annotation	PF06257, TIGR00739, COG4466	NA	NA
UHGV-0106979_34	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0106979_34	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0106979_34	UniRef90	UniRef90_R6V613	Phage antirepressor protein	NA
UHGV-0106979_34	eggNOG-mapper	1122146.AUHP01000010_gene1023	BRO family, N-terminal domain	NA
UHGV-0106979_34	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0106979_34	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0106979_34	COG	COG3617	Prophage antirepressor	NA
UHGV-0106979_34	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0106979_35	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0106979_35	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0106979_35	UniRef90	UniRef90_A0A3R6PIU8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0106979_35	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0106979_35	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0106979_35	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0106979_35	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0106979_35	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0106979_36	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0106979_36	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0106979_36	eggNOG-mapper	411461.DORFOR_01142	NA	NA
UHGV-0106979_36	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0106979_36	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0106979_37	PHROG	phrog_16304	NA	unknown function
UHGV-0106979_37	UniRef90	UniRef90_UPI000E7583BF	NA	NA
UHGV-0106979_37	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0106979_37	Pfam	PF19808	NA	DUF6291
UHGV-0106979_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0106979_37	Structural annotation	PF19808	NA	NA
UHGV-0106979_38	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0106979_38	UniRef90	UniRef90_A0A3R6WN18	NA	NA
UHGV-0106979_38	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0106979_38	Pfam	PF06356	NA	DUF1064
UHGV-0106979_38	Structural annotation	PF06356	NA	NA
UHGV-0106979_39	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0106979_39	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0106979_39	UniRef90	UniRef90_A0A173W8R4	p33	NA
UHGV-0106979_39	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0106979_39	Pfam	PF03837	RecT family	RecT
UHGV-0106979_39	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0106979_39	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0106979_39	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0106979_42	PHROG	phrog_674	NA	unknown function
UHGV-0106979_42	UniRef90	UniRef90_UPI00156D61E9	NA	NA
UHGV-0106979_42	eggNOG-mapper	1095750.HMPREF9970_1676	NA	NA
UHGV-0106979_42	Pfam	PF07083	NA	DUF1351
UHGV-0106979_42	Structural annotation	PF07083	NA	NA
UHGV-0106979_43	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0106979_43	UniRef90	UniRef90_UPI000E75BB92	YqaJ viral recombinase family protein	NA
UHGV-0106979_43	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0106979_43	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0106979_43	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0106979_43	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0106979_43	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0106979_45	UniRef90	UniRef90_R5VU56	HTH_11 domain-containing protein	NA
UHGV-0106979_45	Structural annotation	PF20063	NA	NA
UHGV-0106979_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0106979_48	UniRef90	UniRef90_A0A3E2TSC3	XRE family transcriptional regulator	NA
UHGV-0106979_48	eggNOG-mapper	411469.EUBHAL_01993	Helix-turn-helix XRE-family like proteins	NA
UHGV-0106979_48	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0106979_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0106979_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0106979_48	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0106979_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0106979_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0106979_49	UniRef90	UniRef90_A0A417PKX0	XRE family transcriptional regulator	NA
UHGV-0106979_49	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0106979_49	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0106979_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0106979_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0106979_49	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0106979_50	PHROG	phrog_1847	NA	unknown function
UHGV-0106979_50	UniRef90	UniRef90_A0A1Y4RD72	ATPase	NA
UHGV-0106979_50	eggNOG-mapper	1235792.C808_05258	NA	NA
UHGV-0106979_50	Pfam	PF13250	NA	DUF4041
UHGV-0106979_50	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0106979_50	COG	COG0172	Seryl-tRNA synthetase	NA
UHGV-0106979_50	Structural annotation	PF13250, PF19824	NA	NA
UHGV-0106979_51	KOfam	K14059	int; integrase	NA
UHGV-0106979_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0106979_51	UniRef90	UniRef90_A0A3A6JBV3	Site-specific integrase	NA
UHGV-0106979_51	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0106979_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0106979_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0106979_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA