UHGV-0107044

Genome information

Genome length 46,941 bps

CDS count 75

Completeness 96.76% (high-quality)

geNomad score 0.9759

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107044
vOTU ID	vOTU-067985
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_237612
BioSample	SAMEA3708541
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9759
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.1
Jumbo phage	No

Genome content
Genome length	46,941 bps
GC content	49.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	88.94%
Average CDS length	558.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107044_1	PHROG	phrog_32789	NA	unknown function
UHGV-0107044_1	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0107044_1	Structural annotation	PF21711, MF_01525, TIGR03570, COG2171	NA	NA
UHGV-0107044_3	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0107044_3	UniRef90	UniRef90_UPI00164C574E	DNA adenine methylase	NA
UHGV-0107044_3	eggNOG-mapper	1688.BCUN_0619	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0107044_3	PADLOC	MTase_II_00075	Type II methyltransferase	RM
UHGV-0107044_3	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0107044_3	Structural annotation	PF02086, NF008152, COG0338	NA	NA
UHGV-0107044_4	UniRef90	UniRef90_UPI0018A05105	zinc-finger domain-containing protein	NA
UHGV-0107044_8	PHROG	phrog_129	transcriptional regulator	transcription regulation
UHGV-0107044_8	UniRef90	UniRef90_UPI001D081896	KilA-N domain-containing protein	NA
UHGV-0107044_8	eggNOG-mapper	1121100.JCM6294_529	KilA-N domain	NA
UHGV-0107044_8	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0107044_8	Structural annotation	PF04383, NF033622	NA	NA
UHGV-0107044_11	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0107044_11	UniRef90	UniRef90_A0A7X7UVS4	ERF family protein	NA
UHGV-0107044_11	eggNOG-mapper	762982.HMPREF9442_00551	Erf family	NA
UHGV-0107044_11	Pfam	PF04404	ERF superfamily	ERF
UHGV-0107044_11	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0107044_13	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0107044_14	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0107044_14	eggNOG-mapper	1121100.JCM6294_522	NA	NA
UHGV-0107044_14	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0107044_15	PHROG	phrog_23776	NA	unknown function
UHGV-0107044_15	eggNOG-mapper	445970.ALIPUT_01604	NA	NA
UHGV-0107044_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107044_15	Structural annotation	PF01978, MF_01819, NF041230, COG3355	NA	NA
UHGV-0107044_16	PHROG	phrog_29547	NA	unknown function
UHGV-0107044_16	eggNOG-mapper	619693.HMPREF6745_2494	NA	NA
UHGV-0107044_16	Pfam	PF20338	NA	DUF6633
UHGV-0107044_16	Structural annotation	PF20338	NA	NA
UHGV-0107044_17	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107044_17	eggNOG-mapper	449673.BACSTE_02198	NA	NA
UHGV-0107044_18	PHROG	phrog_111	DNA methyltransferase	other
UHGV-0107044_18	UniRef90	UniRef90_A0A5B5VMW7	Adenine methyltransferase	NA
UHGV-0107044_18	eggNOG-mapper	1567011.A0A0A7RUD1_9VIRU	DNA N-6-adenine-methyltransferase (Dam)	NA
UHGV-0107044_18	PADLOC	oMTase_00015	orphan methyltransferase	RM
UHGV-0107044_18	Pfam	PF05869	DNA N-6-adenine-methyltransferase (Dam)	Dam
UHGV-0107044_18	Structural annotation	PF05869, MF_03187, TIGR01712, COG2263	NA	NA
UHGV-0107044_19	KOfam	K02536	lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]	NA
UHGV-0107044_19	PHROG	phrog_32789	NA	unknown function
UHGV-0107044_19	UniRef90	UniRef90_UPI0018736416	acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase	NA
UHGV-0107044_19	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0107044_19	Structural annotation	PF21711, MF_01525, NF007797, COG1045	NA	NA
UHGV-0107044_20	Structural annotation	NF011227	NA	NA
UHGV-0107044_21	Structural annotation	PF16546	NA	NA
UHGV-0107044_24	PHROG	phrog_10841	NA	unknown function
UHGV-0107044_29	PHROG	phrog_35741	NA	unknown function
UHGV-0107044_29	eggNOG-mapper	445970.ALIPUT_01619	NA	NA
UHGV-0107044_30	PHROG	phrog_8684	NA	unknown function
UHGV-0107044_30	UniRef90	UniRef90_UPI0015BFB08D	YopX family protein	NA
UHGV-0107044_30	eggNOG-mapper	445970.ALIPUT_01614	YopX protein	NA
UHGV-0107044_30	Pfam	PF09643	YopX protein	YopX
UHGV-0107044_30	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0107044_30	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0107044_31	PHROG	phrog_874	NA	unknown function
UHGV-0107044_31	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0107044_31	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0107044_32	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0107044_35	PHROG	phrog_25262	NA	unknown function
UHGV-0107044_35	UniRef90	UniRef90_UPI0015BB2909	helix-turn-helix domain-containing protein	NA
UHGV-0107044_35	eggNOG-mapper	266762.HQ36_02025	Helix-turn-helix domain	NA
UHGV-0107044_35	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0107044_35	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0107044_35	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0107044_36	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0107044_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0107044_36	UniRef90	UniRef90_UPI0015BF142B	site-specific integrase	NA
UHGV-0107044_36	eggNOG-mapper	742727.HMPREF9447_03572	Belongs to the 'phage' integrase family	NA
UHGV-0107044_36	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0107044_36	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0107044_36	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107044_36	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0107044_36	Structural annotation	PF00589, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0107044_37	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0107044_37	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0107044_38	PHROG	phrog_38431	NA	unknown function
UHGV-0107044_38	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0107044_38	eggNOG-mapper	445970.ALIPUT_01628	NA	NA
UHGV-0107044_40	PHROG	phrog_28898	NA	unknown function
UHGV-0107044_40	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0107044_40	Structural annotation	PF10781	NA	NA
UHGV-0107044_41	PHROG	phrog_31654	NA	unknown function
UHGV-0107044_41	eggNOG-mapper	742725.HMPREF9450_02106	NA	NA
UHGV-0107044_42	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107044_42	UniRef90	UniRef90_A0A5B5VKH1	HNHc domain-containing protein	NA
UHGV-0107044_42	eggNOG-mapper	357276.EL88_11520	HNH endonuclease domain protein	NA
UHGV-0107044_42	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0107044_42	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0107044_42	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0107044_42	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0107044_43	PHROG	phrog_16490	NA	unknown function
UHGV-0107044_43	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0107044_43	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0107044_44	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0107044_44	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0107044_45	PHROG	phrog_15610	protease	other
UHGV-0107044_45	UniRef90	UniRef90_A0A345MT47	Putative Zincin superfamily protease	NA
UHGV-0107044_45	eggNOG-mapper	1392486.JIAF01000004_gene1703	NA	NA
UHGV-0107044_46	PHROG	phrog_26448	NA	unknown function
UHGV-0107044_46	eggNOG-mapper	742726.HMPREF9448_01214	NA	NA
UHGV-0107044_46	Pfam	PF20647	NA	DUF6808
UHGV-0107044_46	Structural annotation	PF20647	NA	NA
UHGV-0107044_47	PHROG	phrog_873	endolysin	head and packaging
UHGV-0107044_47	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0107044_47	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0107044_49	PHROG	phrog_15037	NA	unknown function
UHGV-0107044_49	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0107044_49	eggNOG-mapper	1347393.HG726021_gene389	NA	NA
UHGV-0107044_52	Structural annotation	PF07603	NA	NA
UHGV-0107044_54	eggNOG-mapper	1122981.AUME01000026_gene519	NA	NA
UHGV-0107044_55	PHROG	phrog_21217	NA	unknown function
UHGV-0107044_55	eggNOG-mapper	762984.HMPREF9445_00181	NA	NA
UHGV-0107044_56	PHROG	phrog_14295	NA	unknown function
UHGV-0107044_56	eggNOG-mapper	445970.ALIPUT_01650	NA	NA
UHGV-0107044_56	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0107044_57	PHROG	phrog_33698	NA	unknown function
UHGV-0107044_57	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-0107044_57	eggNOG-mapper	742767.HMPREF9456_03372	NA	NA
UHGV-0107044_58	Structural annotation	PF19266, TIGR02126, COG5437	NA	NA
UHGV-0107044_60	Structural annotation	PF05561	NA	NA
UHGV-0107044_62	eggNOG-mapper	1122971.BAME01000143_gene6480	NA	NA
UHGV-0107044_64	PHROG	phrog_10	major head protein	head and packaging
UHGV-0107044_64	UniRef90	UniRef90_A0A2V2FQN4	Phage major capsid protein	NA
UHGV-0107044_64	eggNOG-mapper	292414.TM1040_1668	capsid protein	NA
UHGV-0107044_64	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0107044_64	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0107044_64	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0107044_64	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0107044_65	KOfam	K06904	NA	NA
UHGV-0107044_65	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0107044_65	eggNOG-mapper	1166018.FAES_3983	Caudovirus prohead serine protease	NA
UHGV-0107044_65	COG	COG3740	Phage head maturation protease	NA
UHGV-0107044_66	PHROG	phrog_12	portal protein	head and packaging
UHGV-0107044_66	UniRef90	UniRef90_UPI00111ECBEF	phage portal protein	NA
UHGV-0107044_66	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0107044_66	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0107044_66	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0107044_67	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107044_67	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0107044_67	UniRef90	UniRef90_A0A497PCX3	Terminase	NA
UHGV-0107044_67	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-0107044_67	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0107044_67	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0107044_67	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107044_67	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107044_68	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0107044_68	UniRef90	UniRef90_UPI00039D57E3	DNA-packaging protein	NA
UHGV-0107044_68	eggNOG-mapper	1116369.KB890024_gene3033	DNA-packaging protein gp3	NA
UHGV-0107044_68	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0107044_68	Structural annotation	PF16677	NA	NA
UHGV-0107044_69	PHROG	phrog_4002	NA	unknown function
UHGV-0107044_69	UniRef90	UniRef90_A0A2V2FKF1	NA	NA
UHGV-0107044_69	eggNOG-mapper	742727.HMPREF9447_01595	NA	NA
UHGV-0107044_69	Pfam	PF14730	NA	DUF4468
UHGV-0107044_70	UniRef90	UniRef90_A0A174RXI4	Helix-turn-helix transcriptional regulator	NA
UHGV-0107044_70	eggNOG-mapper	445970.ALIPUT_02025	NA	NA
UHGV-0107044_70	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0107044_74	KOfam	K14979	ssrB; two-component system, LuxR family, secretion system response regulator SsrB	NA
UHGV-0107044_74	PHROG	phrog_10300	transcriptional regulator	transcription regulation
UHGV-0107044_74	UniRef90	UniRef90_UPI001D08AAEB	helix-turn-helix transcriptional regulator	NA
UHGV-0107044_74	eggNOG-mapper	445970.ALIPUT_01218	Transcriptional regulator, LuxR family	NA
UHGV-0107044_74	PADLOC	drt-cluster972	DRT	DRT
UHGV-0107044_74	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0107044_74	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0107044_74	Structural annotation	PF00196, MF_00674, NF011940, COG2771	NA	NA
UHGV-0107044_75	KOfam	K02536	lpxD; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [EC:2.3.1.191]	NA
UHGV-0107044_75	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep