UHGV-0107057

Genome information

Genome length 40,803 bps

CDS count 66

Completeness 99.90% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107057
vOTU ID	vOTU-067927
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245603
BioSample	SAMEA3708822
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.46
Jumbo phage	No

Genome content
Genome length	40,803 bps
GC content	28.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	91.96%
Average CDS length	572.14 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107057_2	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0107057_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107057_2	UniRef90	UniRef90_R5YVI1	HTH-type transcriptional regulator SinR	NA
UHGV-0107057_2	eggNOG-mapper	596319.STAWA0001_2448	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0107057_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0107057_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107057_2	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0107057_2	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0107057_2	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0107057_3	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0107057_3	Structural annotation	PF02583, COG1937	NA	NA
UHGV-0107057_4	KOfam	K07341	doc; death on curing protein	NA
UHGV-0107057_4	PHROG	phrog_577	Doc-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0107057_4	UniRef90	UniRef90_A0A3A9JVV6	Type II toxin-antitoxin system death-on-curing family toxin	NA
UHGV-0107057_4	eggNOG-mapper	986075.CathTA2_2755	Fic/DOC family	NA
UHGV-0107057_4	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0107057_4	NCBIFam	TIGR01550.1	type II toxin-antitoxin system death-on-curing family toxin	NA
UHGV-0107057_4	COG	COG3654	Prophage maintenance system killer protein	NA
UHGV-0107057_6	PHROG	phrog_2329	NA	unknown function
UHGV-0107057_7	PHROG	phrog_1794	amidase	lysis
UHGV-0107057_7	UniRef90	UniRef90_A0A1Q6LC62	SH3b domain-containing protein	NA
UHGV-0107057_7	eggNOG-mapper	1121422.AUMW01000009_gene3264	Papain-like cysteine protease AvrRpt2	NA
UHGV-0107057_7	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0107057_7	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0107057_8	UniRef90	UniRef90_R7GCP8	Peptidoglycan-binding domain 1 protein	NA
UHGV-0107057_9	PHROG	phrog_689	holin	lysis
UHGV-0107057_9	UniRef90	UniRef90_UPI000F62D424	hemolysin XhlA family protein	NA
UHGV-0107057_9	eggNOG-mapper	545243.BAEV01000153_gene379	Haemolysin XhlA	NA
UHGV-0107057_9	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0107057_10	PHROG	phrog_2310	NA	unknown function
UHGV-0107057_10	eggNOG-mapper	632245.CLP_2682	NA	NA
UHGV-0107057_11	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0107057_12	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0107057_13	PHROG	phrog_7064	tail protein	tail
UHGV-0107057_14	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0107057_14	Structural annotation	PF05895, MF_00791, NF010681, COG2967	NA	NA
UHGV-0107057_15	Structural annotation	PF20747	NA	NA
UHGV-0107057_16	PHROG	phrog_20385	minor tail protein	tail
UHGV-0107057_16	UniRef90	UniRef90_UPI0013797660	phage baseplate protein	NA
UHGV-0107057_16	eggNOG-mapper	1139219.I569_00095	Baseplate protein	NA
UHGV-0107057_16	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0107057_17	KOfam	K16808	NUMA1; nuclear mitotic apparatus protein 1	NA
UHGV-0107057_17	PHROG	phrog_17321	NA	unknown function
UHGV-0107057_17	UniRef90	UniRef90_R7FHV4	Phage tail tape measure protein family	NA
UHGV-0107057_17	eggNOG-mapper	1123309.AQYB01000019_gene903	Phage-related minor tail protein	NA
UHGV-0107057_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0107057_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0107057_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0107057_17	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0107057_19	PHROG	phrog_5319	outer membrane protein	other
UHGV-0107057_19	UniRef90	UniRef90_A0A3S1E765	Zinc ribbon domain-containing protein	NA
UHGV-0107057_19	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0107057_19	COG	COG3103	NA	NA
UHGV-0107057_19	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-0107057_20	UniRef90	UniRef90_A0A2C1RHH7	Phage tail protein	NA
UHGV-0107057_20	eggNOG-mapper	1027396.LMOSA_21460	NA	NA
UHGV-0107057_20	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0107057_21	PHROG	phrog_5509	neck protein	connector
UHGV-0107057_21	UniRef90	UniRef90_Q8W600	Gp9 protein	NA
UHGV-0107057_21	eggNOG-mapper	1123315.AUIP01000014_gene1956	NA	NA
UHGV-0107057_23	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0107057_23	UniRef90	UniRef90_A0A1B7KUM3	Phage head-tail adapter protein	NA
UHGV-0107057_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0107057_24	PHROG	phrog_749	NA	unknown function
UHGV-0107057_24	eggNOG-mapper	864178.E2ELI6_9CAUD	NA	NA
UHGV-0107057_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0107057_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0107057_25	UniRef90	UniRef90_UPI0018CF734A	phage major capsid protein	NA
UHGV-0107057_25	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0107057_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0107057_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0107057_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0107057_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0107057_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0107057_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0107057_26	UniRef90	UniRef90_A0A7U4LNK5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0107057_26	eggNOG-mapper	1295642.H839_15963	Serine dehydrogenase proteinase	NA
UHGV-0107057_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0107057_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0107057_26	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0107057_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0107057_27	UniRef90	UniRef90_A0A6I1MNZ3	Phage portal protein	NA
UHGV-0107057_27	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0107057_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0107057_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0107057_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0107057_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0107057_28	UniRef90	UniRef90_A0A1B7KUQ8	Terminase	NA
UHGV-0107057_28	eggNOG-mapper	1450694.BTS2_0545	Terminase	NA
UHGV-0107057_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0107057_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0107057_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0107057_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0107057_29	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0107057_29	UniRef90	UniRef90_UPI0015C65CE4	RNA polymerase subunit sigma-70	NA
UHGV-0107057_29	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0107057_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0107057_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0107057_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107057_31	UniRef90	UniRef90_UPI001C40B28B	HNH endonuclease	NA
UHGV-0107057_31	eggNOG-mapper	330396.A8ATF8_9CAUD	HNH endonuclease	NA
UHGV-0107057_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107057_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0107057_35	eggNOG-mapper	1401067.HMPREF0872_06835	NA	NA
UHGV-0107057_35	Structural annotation	PF07374, NF008895	NA	NA
UHGV-0107057_36	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0107057_36	UniRef90	UniRef90_A0A285PT53	Prokaryotic membrane lipoprotein lipid attachment site profile	NA
UHGV-0107057_36	eggNOG-mapper	1235792.C808_00058	NA	NA
UHGV-0107057_37	Structural annotation	PF14001, MF_01194, TIGR03318, COG5475	NA	NA
UHGV-0107057_40	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0107057_40	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0107057_40	UniRef90	UniRef90_A0A843GTF7	RNA-splicing ligase RtcB	NA
UHGV-0107057_40	eggNOG-mapper	573061.Clocel_3404	tRNA-splicing ligase RtcB	NA
UHGV-0107057_40	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0107057_40	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0107057_40	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0107057_42	KOfam	K05925	METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348]	NA
UHGV-0107057_42	PHROG	phrog_359	DNA methyltransferase	other
UHGV-0107057_42	UniRef90	UniRef90_A0A424N484	DNA methyltransferase	NA
UHGV-0107057_42	eggNOG-mapper	1235800.C819_00509	MT-A70	NA
UHGV-0107057_42	PADLOC	MTase_II_00048	Type II methyltransferase	RM
UHGV-0107057_42	Pfam	PF05063	MT-A70	MT-A70
UHGV-0107057_42	COG	COG4725	N6-adenosine-specific RNA methylase IME4	NA
UHGV-0107057_42	Structural annotation	PF05063, MF_01872, NF010253, COG4725	NA	NA
UHGV-0107057_43	Structural annotation	PF15188	NA	NA
UHGV-0107057_44	PHROG	phrog_1123	NA	unknown function
UHGV-0107057_44	eggNOG-mapper	1308863.U5J9F3_9CAUD	NA	NA
UHGV-0107057_44	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0107057_46	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0107057_46	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0107057_46	UniRef90	UniRef90_R5ZPV6	DNA helicase	NA
UHGV-0107057_46	eggNOG-mapper	521460.Athe_0882	Participates in initiation and elongation during chromosome replication	NA
UHGV-0107057_46	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0107057_46	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0107057_46	COG	COG0305	Replicative DNA helicase	NA
UHGV-0107057_46	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0107057_47	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107057_47	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0107057_47	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0107057_47	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107057_48	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0107057_48	UniRef90	UniRef90_UPI00164B51D6	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0107057_48	eggNOG-mapper	457412.RSAG_04664	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0107057_48	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0107057_48	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0107057_48	Structural annotation	PF09681, TIGR01714, COG1321	NA	NA
UHGV-0107057_51	PHROG	phrog_2329	NA	unknown function
UHGV-0107057_51	Structural annotation	MF_01193, NF007312, COG2336	NA	NA
UHGV-0107057_53	PHROG	phrog_7566	NA	unknown function
UHGV-0107057_54	PHROG	phrog_1389	NA	unknown function
UHGV-0107057_54	eggNOG-mapper	536233.CLO_1823	NA	NA
UHGV-0107057_54	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0107057_59	Structural annotation	PF09035, NF040990, COG3311	NA	NA
UHGV-0107057_60	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0107057_60	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0107057_60	UniRef90	UniRef90_R7ITQ6	Bro-N domain-containing protein	NA
UHGV-0107057_60	eggNOG-mapper	469617.FUAG_02551	Phage antirepressor protein KilAC domain	NA
UHGV-0107057_60	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0107057_60	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0107057_60	COG	COG3617	Prophage antirepressor	NA
UHGV-0107057_60	Structural annotation	PF03374, PF02498, COG3645	NA	NA
UHGV-0107057_61	UniRef90	UniRef90_A0A3D1PJT4	HTH cro/C1-type domain-containing protein	NA
UHGV-0107057_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107057_61	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0107057_61	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0107057_62	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0107057_62	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107057_62	UniRef90	UniRef90_S6FAP7	Putative transcriptional regulator	NA
UHGV-0107057_62	eggNOG-mapper	1391647.AVSV01000039_gene1077	Helix-turn-helix XRE-family like proteins	NA
UHGV-0107057_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107057_62	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107057_63	eggNOG-mapper	1336234.JAGN01000004_gene561	NA	NA
UHGV-0107057_64	Structural annotation	PF15968	NA	NA
UHGV-0107057_65	PHROG	phrog_87	metallo-protease	other
UHGV-0107057_65	UniRef90	UniRef90_R5PN39	NA	NA
UHGV-0107057_65	eggNOG-mapper	857293.CAAU_0764	Zn peptidase	NA
UHGV-0107057_65	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0107057_65	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0107057_65	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0107057_66	KOfam	K14059	int; integrase	NA
UHGV-0107057_66	PHROG	phrog_1	integrase	integration and excision
UHGV-0107057_66	UniRef90	UniRef90_UPI0015C5C81A	site-specific integrase	NA
UHGV-0107057_66	eggNOG-mapper	1235798.C817_02938	Phage integrase family	NA
UHGV-0107057_66	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0107057_66	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107057_66	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0107057_66	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA