UHGV-0107092

Genome information

Genome length 38,990 bps

CDS count 59

Completeness 99.90% (high-quality)

geNomad score 0.9751

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107092
vOTU ID	vOTU-079312
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_242836
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9751
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.21
Jumbo phage	No

Genome content
Genome length	38,990 bps
GC content	46.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	89.33%
Average CDS length	594.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107092_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0107092_1	PHROG	phrog_3088	amidase	lysis
UHGV-0107092_1	UniRef90	UniRef90_A0A174NGB2	N-acetylmuramoyl-L-alanine amidase CwlH	NA
UHGV-0107092_1	eggNOG-mapper	742740.HMPREF9474_01195	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0107092_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0107092_1	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107092_1	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-0107092_2	PHROG	phrog_1129	holin	lysis
UHGV-0107092_2	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0107092_2	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0107092_2	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0107092_2	Structural annotation	PF16079	NA	NA
UHGV-0107092_3	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0107092_3	PHROG	phrog_7573	NA	unknown function
UHGV-0107092_3	UniRef90	UniRef90_R7JVK4	Mn-containing catalase	NA
UHGV-0107092_3	eggNOG-mapper	180332.JTGN01000007_gene3665	PFAM Manganese containing catalase	NA
UHGV-0107092_3	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0107092_3	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0107092_3	Structural annotation	PF05067, MF_00931, TIGR04535, COG3546	NA	NA
UHGV-0107092_4	PHROG	phrog_14030	NA	unknown function
UHGV-0107092_4	UniRef90	UniRef90_A0A174JX56	Spore cortex-lytic enzyme	NA
UHGV-0107092_4	eggNOG-mapper	742741.HMPREF9475_00446	NA	NA
UHGV-0107092_4	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0107092_4	Structural annotation	PF01471, COG3409	NA	NA
UHGV-0107092_5	PHROG	phrog_199	holin	lysis
UHGV-0107092_5	UniRef90	UniRef90_A0A416ZS05	Holin	NA
UHGV-0107092_5	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0107092_5	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0107092_5	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0107092_5	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0107092_6	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0107092_6	PHROG	phrog_1	integrase	integration and excision
UHGV-0107092_6	UniRef90	UniRef90_A0A416ZRY9	Integrase	NA
UHGV-0107092_6	eggNOG-mapper	888743.HMPREF9141_2430	Belongs to the 'phage' integrase family	NA
UHGV-0107092_6	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0107092_6	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107092_6	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0107092_6	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0107092_7	UniRef90	UniRef90_UPI0013141798	ribbon-helix-helix protein, CopG family	NA
UHGV-0107092_7	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0107092_7	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0107092_8	PHROG	phrog_11541	NA	unknown function
UHGV-0107092_8	UniRef90	UniRef90_UPI001E5D77CC	SGNH/GDSL hydrolase family protein	NA
UHGV-0107092_8	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0107092_9	PHROG	phrog_19695	NA	unknown function
UHGV-0107092_9	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0107092_9	Structural annotation	PF19714	NA	NA
UHGV-0107092_10	PHROG	phrog_24267	NA	unknown function
UHGV-0107092_10	UniRef90	UniRef90_A0A174B5G0	Phage-related holin (Lysis protein)	NA
UHGV-0107092_10	eggNOG-mapper	1123302.KB904167_gene530	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0107092_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0107092_11	PHROG	phrog_11037	NA	unknown function
UHGV-0107092_11	UniRef90	UniRef90_A0A174B682	NlpC/P60 family	NA
UHGV-0107092_11	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0107092_11	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0107092_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0107092_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0107092_11	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0107092_12	PHROG	phrog_6616	tail protein	tail
UHGV-0107092_12	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0107092_12	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0107092_12	COG	COG4926	Phage-related protein	NA
UHGV-0107092_12	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0107092_13	PHROG	phrog_1194	NA	unknown function
UHGV-0107092_13	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0107092_13	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0107092_14	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0107092_14	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0107092_14	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0107092_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0107092_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0107092_15	PHROG	phrog_8355	NA	unknown function
UHGV-0107092_15	UniRef90	UniRef90_UPI001C10E2B7	Gp15 family bacteriophage protein	NA
UHGV-0107092_15	eggNOG-mapper	33035.JPJF01000093_gene2244	NA	NA
UHGV-0107092_16	PHROG	phrog_8300	NA	unknown function
UHGV-0107092_16	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0107092_16	Structural annotation	PF06854	NA	NA
UHGV-0107092_17	PHROG	phrog_820	major tail protein	tail
UHGV-0107092_17	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0107092_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0107092_18	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0107092_18	UniRef90	UniRef90_UPI001C00BA9C	minor capsid protein	NA
UHGV-0107092_18	eggNOG-mapper	1123263.AUKY01000051_gene1075	NA	NA
UHGV-0107092_18	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0107092_18	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0107092_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0107092_19	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0107092_20	PHROG	phrog_8710	NA	unknown function
UHGV-0107092_20	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0107092_20	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0107092_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0107092_21	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0107092_22	PHROG	phrog_15682	NA	unknown function
UHGV-0107092_22	UniRef90	UniRef90_UPI001788BFA4	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0107092_22	eggNOG-mapper	1408823.AXUS01000024_gene2717	NA	NA
UHGV-0107092_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-0107092_23	UniRef90	UniRef90_A0A416Q289	Phage capsid protein	NA
UHGV-0107092_23	eggNOG-mapper	1151292.QEW_2433	NA	NA
UHGV-0107092_23	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0107092_23	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0107092_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0107092_24	UniRef90	UniRef90_A0A174B6A1	Phage minor structural protein GP20	NA
UHGV-0107092_24	eggNOG-mapper	1294142.CINTURNW_1028	Phage minor structural protein GP20	NA
UHGV-0107092_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0107092_24	Structural annotation	PF06810	NA	NA
UHGV-0107092_26	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0107092_26	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0107092_26	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0107092_27	PHROG	phrog_918	NA	unknown function
UHGV-0107092_27	UniRef90	UniRef90_UPI00115A7D93	NA	NA
UHGV-0107092_27	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0107092_27	Pfam	PF19791	NA	DUF6275
UHGV-0107092_27	Structural annotation	PF19791	NA	NA
UHGV-0107092_28	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0107092_28	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0107092_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0107092_30	UniRef90	UniRef90_A0A416Q253	Minor capsid protein	NA
UHGV-0107092_30	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0107092_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0107092_30	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0107092_30	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0107092_30	Structural annotation	PF06152	NA	NA
UHGV-0107092_31	PHROG	phrog_25639	NA	unknown function
UHGV-0107092_31	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0107092_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107092_32	UniRef90	UniRef90_A0A174B3T3	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0107092_32	eggNOG-mapper	394503.Ccel_3049	NA	NA
UHGV-0107092_32	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0107092_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0107092_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107092_33	UniRef90	UniRef90_A0A174B1X3	Phage terminase, large subunit, PBSX family	NA
UHGV-0107092_33	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0107092_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107092_33	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0107092_34	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0107092_34	UniRef90	UniRef90_UPI001C0F3787	helix-turn-helix domain-containing protein	NA
UHGV-0107092_34	eggNOG-mapper	1536772.R70723_06635	transposase activity	NA
UHGV-0107092_34	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0107092_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0107092_34	Structural annotation	PF07141	NA	NA
UHGV-0107092_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0107092_35	UniRef90	UniRef90_A0A416ZS25	NA	NA
UHGV-0107092_35	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0107092_35	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0107092_35	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0107092_35	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0107092_36	PHROG	phrog_22292	NA	unknown function
UHGV-0107092_37	Structural annotation	PF18350, MF_00369, COG2139	NA	NA
UHGV-0107092_39	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107092_39	UniRef90	UniRef90_A0A174S3H8	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0107092_39	eggNOG-mapper	1567013.A0A0A7RTL4_9CAUD	calcium ion binding	NA
UHGV-0107092_39	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0107092_39	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0107092_39	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0107092_40	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107092_40	UniRef90	UniRef90_A0A416AFS0	NA	NA
UHGV-0107092_40	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0107092_40	Pfam	PF06356	NA	DUF1064
UHGV-0107092_40	Structural annotation	PF06356	NA	NA
UHGV-0107092_41	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0107092_41	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107092_41	UniRef90	UniRef90_A0A174S775	Single-stranded DNA-binding protein	NA
UHGV-0107092_41	eggNOG-mapper	622312.ROSEINA2194_04345	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0107092_41	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0107092_41	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0107092_41	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107092_41	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0107092_41	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0107092_42	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0107092_42	UniRef90	UniRef90_A0A174S6P0	ERF superfamily	NA
UHGV-0107092_42	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0107092_42	Pfam	PF04404	ERF superfamily	ERF
UHGV-0107092_42	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107092_42	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0107092_43	PHROG	phrog_674	NA	unknown function
UHGV-0107092_43	UniRef90	UniRef90_A0A416ZL44	NA	NA
UHGV-0107092_43	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0107092_43	Pfam	PF07083	NA	DUF1351
UHGV-0107092_43	Structural annotation	PF07083	NA	NA
UHGV-0107092_50	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0107092_50	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0107092_50	UniRef90	UniRef90_UPI001897DB88	phage antirepressor KilAC domain-containing protein	NA
UHGV-0107092_50	eggNOG-mapper	1232452.BAIB02000007_gene1603	BRO family, N-terminal domain	NA
UHGV-0107092_50	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0107092_50	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0107092_50	COG	COG3617	Prophage antirepressor	NA
UHGV-0107092_50	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0107092_53	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107092_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107092_53	UniRef90	UniRef90_A0A4P9CA46	XRE family transcriptional regulator	NA
UHGV-0107092_53	eggNOG-mapper	1211844.CBLM010000016_gene1521	Helix-turn-helix XRE-family like proteins	NA
UHGV-0107092_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107092_53	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0107092_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107092_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107092_55	UniRef90	UniRef90_A0A8E3SLX4	Helix-turn-helix transcriptional regulator	NA
UHGV-0107092_55	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0107092_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107092_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0107092_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0107092_58	UniRef90	UniRef90_A0A8D9UIV6	RNAse domain protein	NA
UHGV-0107092_58	Structural annotation	PF02701	NA	NA
UHGV-0107092_59	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0107092_59	PHROG	phrog_95	integrase	integration and excision
UHGV-0107092_59	UniRef90	UniRef90_A0A174S1P9	Resolvase, N terminal domain	NA
UHGV-0107092_59	eggNOG-mapper	411459.RUMOBE_00967	COG COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0107092_59	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0107092_59	Pfam	PF07508	Recombinase	Recombinase
UHGV-0107092_59	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0107092_59	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0107092_59	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA