UHGV-0107211

Genome information

Genome length 37,620 bps

CDS count 59

Completeness 99.18% (high-quality)

geNomad score 0.9743

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107211
vOTU ID	vOTU-014508
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_242248
BioSample	SAMEA3708550
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9743
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.77
Jumbo phage	No

Genome content
Genome length	37,620 bps
GC content	35.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	90.51%
Average CDS length	581.54 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107211_1	Structural annotation	PF04721	NA	NA
UHGV-0107211_3	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0107211_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0107211_3	UniRef90	UniRef90_A0A6G5YKB8	Integrase	NA
UHGV-0107211_3	eggNOG-mapper	33035.JPJF01000058_gene3673	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0107211_3	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0107211_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107211_3	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0107211_3	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0107211_5	PHROG	phrog_6616	tail protein	tail
UHGV-0107211_5	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0107211_5	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0107211_5	COG	COG4926	Phage-related protein	NA
UHGV-0107211_5	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0107211_6	PHROG	phrog_1401	NA	unknown function
UHGV-0107211_6	Structural annotation	PF07761	NA	NA
UHGV-0107211_7	PHROG	phrog_1194	NA	unknown function
UHGV-0107211_7	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0107211_7	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0107211_8	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0107211_8	UniRef90	UniRef90_A0A1C5RRP4	Phage-related protein	NA
UHGV-0107211_8	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0107211_8	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0107211_8	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0107211_9	PHROG	phrog_8355	NA	unknown function
UHGV-0107211_9	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0107211_9	eggNOG-mapper	394503.Ccel_3036	Bacteriophage Gp15 protein	NA
UHGV-0107211_9	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0107211_9	Structural annotation	PF06854	NA	NA
UHGV-0107211_10	PHROG	phrog_8300	NA	unknown function
UHGV-0107211_10	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0107211_10	Structural annotation	PF06896	NA	NA
UHGV-0107211_11	PHROG	phrog_820	major tail protein	tail
UHGV-0107211_11	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0107211_11	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0107211_11	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0107211_12	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0107211_12	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0107211_12	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0107211_12	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0107211_12	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0107211_13	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0107211_13	eggNOG-mapper	483218.BACPEC_01151	NA	NA
UHGV-0107211_14	PHROG	phrog_8710	NA	unknown function
UHGV-0107211_14	eggNOG-mapper	33035.JPJF01000093_gene2249	NA	NA
UHGV-0107211_14	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0107211_15	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0107211_15	eggNOG-mapper	33035.JPJF01000093_gene2250	NA	NA
UHGV-0107211_16	PHROG	phrog_1378	NA	unknown function
UHGV-0107211_16	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0107211_17	PHROG	phrog_422	major head protein	head and packaging
UHGV-0107211_17	UniRef90	UniRef90_A0A356C4N2	Capsid protein	NA
UHGV-0107211_17	eggNOG-mapper	742740.HMPREF9474_03505	NA	NA
UHGV-0107211_18	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0107211_18	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0107211_20	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0107211_20	UniRef90	UniRef90_A0A3D5LSU5	Phage regulatory protein	NA
UHGV-0107211_20	eggNOG-mapper	1499683.CCFF01000014_gene3944	ORF6C domain	NA
UHGV-0107211_20	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0107211_20	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0107211_20	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0107211_20	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0107211_20	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0107211_21	UniRef90	UniRef90_A0A358PKZ1	CopG family transcriptional regulator	NA
UHGV-0107211_21	eggNOG-mapper	1235793.C809_02220	NA	NA
UHGV-0107211_21	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0107211_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0107211_23	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-0107211_23	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0107211_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0107211_23	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0107211_23	Structural annotation	PF06152	NA	NA
UHGV-0107211_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107211_24	UniRef90	UniRef90_A0A3D5LTG9	Capsid protein	NA
UHGV-0107211_24	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0107211_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0107211_25	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107211_25	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0107211_25	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0107211_25	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0107211_25	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0107211_25	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107211_25	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0107211_26	UniRef90	UniRef90_A0Q0G4	Phage Terminase Small Subunit	NA
UHGV-0107211_26	eggNOG-mapper	386415.NT01CX_2043	Terminase small subunit	NA
UHGV-0107211_26	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0107211_27	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0107211_27	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0107211_27	UniRef90	UniRef90_A0A356C6K0	Terminase small subunit	NA
UHGV-0107211_27	eggNOG-mapper	1499683.CCFF01000014_gene3916	Terminase small subunit	NA
UHGV-0107211_27	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0107211_27	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0107211_30	PHROG	phrog_10226	NA	unknown function
UHGV-0107211_30	eggNOG-mapper	431943.CKL_3226	NA	NA
UHGV-0107211_30	Structural annotation	COG4127	NA	NA
UHGV-0107211_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0107211_31	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0107211_31	Structural annotation	PF02996	NA	NA
UHGV-0107211_37	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0107211_39	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107211_39	UniRef90	UniRef90_A0A3D5LV28	HNHc domain-containing protein	NA
UHGV-0107211_39	eggNOG-mapper	1282664.H354_06526	HNH endonuclease	NA
UHGV-0107211_39	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0107211_39	Structural annotation	PF13392	NA	NA
UHGV-0107211_40	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0107211_40	eggNOG-mapper	1449126.JQKL01000051_gene3179	NA	NA
UHGV-0107211_40	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0107211_41	PHROG	phrog_17690	NA	unknown function
UHGV-0107211_41	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0107211_42	PHROG	phrog_7566	NA	unknown function
UHGV-0107211_42	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0107211_43	Structural annotation	PF02179, NF011863	NA	NA
UHGV-0107211_44	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0107211_44	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0107211_44	UniRef90	UniRef90_A0A3B8UHR5	RNase H type-1 domain-containing protein	NA
UHGV-0107211_44	eggNOG-mapper	941824.TCEL_01720	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0107211_44	Pfam	PF00075	RNase H	RNase_H
UHGV-0107211_44	COG	COG0328	Ribonuclease HI	NA
UHGV-0107211_44	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0107211_45	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0107211_45	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0107211_45	eggNOG-mapper	642492.Clole_0725	NA	NA
UHGV-0107211_45	Structural annotation	PF21578	NA	NA
UHGV-0107211_49	PHROG	phrog_20040	NA	unknown function
UHGV-0107211_49	eggNOG-mapper	1538644.KO02_12130	NA	NA
UHGV-0107211_50	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0107211_50	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0107211_50	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0107211_52	Structural annotation	NF037954	NA	NA
UHGV-0107211_55	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0107211_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107211_55	UniRef90	UniRef90_A0A356C4L0	XRE family transcriptional regulator	NA
UHGV-0107211_55	eggNOG-mapper	1161413.HMPREF1510_1296	Transcriptional regulator	NA
UHGV-0107211_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107211_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0107211_55	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0107211_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107211_56	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0107211_56	UniRef90	UniRef90_A0A3D5LQZ9	XRE family transcriptional regulator	NA
UHGV-0107211_56	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0107211_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107211_56	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0107211_56	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0107211_57	PHROG	phrog_20886	NA	unknown function
UHGV-0107211_57	UniRef90	UniRef90_A0A660M5N1	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0107211_57	eggNOG-mapper	1235798.C817_00619	NA	NA
UHGV-0107211_57	Structural annotation	PF06114	NA	NA
UHGV-0107211_58	UniRef90	UniRef90_UPI001C10185D	phage minor capsid protein	NA
UHGV-0107211_58	eggNOG-mapper	1123263.AUKY01000072_gene2115	NA	NA
UHGV-0107211_58	Structural annotation	PF13424, TIGR01641	NA	NA
UHGV-0107211_59	PHROG	phrog_2695	NA	unknown function
UHGV-0107211_59	UniRef90	UniRef90_A0A174PBX4	SIR2_2 domain-containing protein	NA
UHGV-0107211_59	eggNOG-mapper	1504823.CCMM01000008_gene1082	NAD+ binding	NA
UHGV-0107211_59	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-0107211_59	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-0107211_59	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-0107211_59	Structural annotation	PF13289	NA	NA