UHGV-0107230

Genome information

Genome length 35,586 bps

CDS count 67

Completeness 94.50% (high-quality)

geNomad score 0.9621

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107230
vOTU ID	vOTU-013851
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_264324
BioSample	SAMEA3879571
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9621
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.17
Jumbo phage	No

Genome content
Genome length	35,586 bps
GC content	28.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.65%
Average CDS length	485.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107230_2	Structural annotation	PF11372	NA	NA
UHGV-0107230_4	Pfam	PF19808	NA	DUF6291
UHGV-0107230_5	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0107230_5	PHROG	phrog_4016	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0107230_5	UniRef90	UniRef90_R5A158	DnaD domain protein	NA
UHGV-0107230_5	eggNOG-mapper	1123299.AUKZ01000018_gene209	Replication initiation and membrane attachment	NA
UHGV-0107230_5	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0107230_5	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0107230_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107230_5	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0107230_6	Structural annotation	PF11417, PF08209	NA	NA
UHGV-0107230_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0107230_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107230_7	UniRef90	UniRef90_A0A832QCU5	Single-stranded DNA-binding protein	NA
UHGV-0107230_7	eggNOG-mapper	1232449.BAHV02000010_gene3199	Single-strand binding protein family	NA
UHGV-0107230_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0107230_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107230_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0107230_9	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0107230_9	UniRef90	UniRef90_UPI000F63F93F	ERF family protein	NA
UHGV-0107230_9	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-0107230_9	Pfam	PF04404	ERF superfamily	ERF
UHGV-0107230_9	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0107230_10	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107230_10	UniRef90	UniRef90_A0A350H2L7	YqaJ domain-containing protein	NA
UHGV-0107230_10	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0107230_10	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0107230_10	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0107230_10	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0107230_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0107230_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107230_12	UniRef90	UniRef90_R6M217	Single-stranded DNA-binding protein	NA
UHGV-0107230_12	eggNOG-mapper	1397699.JNIS01000001_gene1537	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0107230_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0107230_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0107230_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107230_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0107230_12	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0107230_14	Structural annotation	PF02559, MF_01194, TIGR02097	NA	NA
UHGV-0107230_15	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0107230_15	UniRef90	UniRef90_R7IG32	Orf31	NA
UHGV-0107230_27	Structural annotation	PF01104, NF041014	NA	NA
UHGV-0107230_28	PHROG	phrog_625	NA	unknown function
UHGV-0107230_28	UniRef90	UniRef90_A0A3E3EHP8	ASCH domain-containing protein	NA
UHGV-0107230_28	eggNOG-mapper	1235800.C819_02245	NA	NA
UHGV-0107230_28	Structural annotation	PF12961	NA	NA
UHGV-0107230_34	PHROG	phrog_7839	NA	unknown function
UHGV-0107230_34	eggNOG-mapper	202954.BBNK01000034_gene3794	NA	NA
UHGV-0107230_35	Structural annotation	PF15456	NA	NA
UHGV-0107230_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0107230_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0107230_36	UniRef90	UniRef90_A0A350H3S5	Terminase small subunit	NA
UHGV-0107230_36	eggNOG-mapper	536232.CLM_2664	Terminase small subunit	NA
UHGV-0107230_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0107230_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0107230_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0107230_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107230_37	UniRef90	UniRef90_R5A0K2	Putative phage terminase large subunit	NA
UHGV-0107230_37	eggNOG-mapper	645991.Sgly_0335	Phage terminase, large subunit, PBSX family	NA
UHGV-0107230_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107230_37	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0107230_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107230_38	UniRef90	UniRef90_R5A3Z5	Putative phage minor capsid protein	NA
UHGV-0107230_38	eggNOG-mapper	1117108.PAALTS15_13582	NA	NA
UHGV-0107230_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0107230_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0107230_40	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-0107230_40	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0107230_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0107230_40	COG	COG2369	NA	NA
UHGV-0107230_40	Structural annotation	PF06152	NA	NA
UHGV-0107230_43	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0107230_43	Structural annotation	MF_02110	NA	NA
UHGV-0107230_44	PHROG	phrog_422	major head protein	head and packaging
UHGV-0107230_44	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0107230_44	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0107230_44	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0107230_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0107230_47	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0107230_48	PHROG	phrog_8710	NA	unknown function
UHGV-0107230_48	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0107230_48	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0107230_48	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0107230_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0107230_49	UniRef90	UniRef90_UPI00058FDD53	minor capsid protein	NA
UHGV-0107230_49	eggNOG-mapper	195103.CPF_0960	NA	NA
UHGV-0107230_50	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0107230_50	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-0107230_50	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-0107230_50	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0107230_50	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0107230_51	PHROG	phrog_820	major tail protein	tail
UHGV-0107230_51	eggNOG-mapper	1282664.H354_06691	NA	NA
UHGV-0107230_51	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0107230_52	PHROG	phrog_8300	NA	unknown function
UHGV-0107230_52	eggNOG-mapper	1507.HMPREF0262_01185	NA	NA
UHGV-0107230_52	Structural annotation	PF06854	NA	NA
UHGV-0107230_53	PHROG	phrog_8355	NA	unknown function
UHGV-0107230_53	UniRef90	UniRef90_A0A1M6RZ32	Bacteriophage Gp15 protein	NA
UHGV-0107230_53	eggNOG-mapper	1123263.AUKY01000051_gene1072	NA	NA
UHGV-0107230_53	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0107230_54	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0107230_54	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-0107230_54	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0107230_54	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0107230_54	Structural annotation	PF06791, COG3941	NA	NA
UHGV-0107230_55	PHROG	phrog_1194	NA	unknown function
UHGV-0107230_55	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0107230_56	PHROG	phrog_6616	tail protein	tail
UHGV-0107230_56	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0107230_56	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0107230_57	PHROG	phrog_372	tail protein	tail
UHGV-0107230_57	UniRef90	UniRef90_UPI0018E46574	NA	NA
UHGV-0107230_57	Structural annotation	PF05895, MF_04116, NF010681, COG3291, COG2967	NA	NA
UHGV-0107230_59	Structural annotation	PF18573, NF033147, COG4935	NA	NA
UHGV-0107230_63	PHROG	phrog_443	holin	lysis
UHGV-0107230_63	UniRef90	UniRef90_UPI0004AE7A41	holin	NA
UHGV-0107230_63	eggNOG-mapper	1211844.CBLM010000023_gene976	Putative lactococcus lactis phage r1t holin	NA
UHGV-0107230_63	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0107230_63	Structural annotation	PF16945	NA	NA
UHGV-0107230_64	PHROG	phrog_7698	endolysin	lysis
UHGV-0107230_64	UniRef90	UniRef90_R6IVV6	Possible cell wall-binding protein	NA
UHGV-0107230_64	eggNOG-mapper	525254.HMPREF0072_1273	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0107230_64	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0107230_64	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0107230_64	Structural annotation	PF08230	NA	NA
UHGV-0107230_65	PHROG	phrog_7566	NA	unknown function
UHGV-0107230_66	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0107230_66	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0107230_66	UniRef90	UniRef90_R7MCP1	Addiction module toxin RelE/StbE family	NA
UHGV-0107230_66	eggNOG-mapper	393480.FNP_1551	Bacterial toxin of type II toxin-antitoxin system, YafQ	NA
UHGV-0107230_66	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0107230_66	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0107230_66	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0107230_66	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0107230_67	KOfam	K07473	dinJ; DNA-damage-inducible protein J	NA
UHGV-0107230_67	PHROG	phrog_2737	NA	unknown function
UHGV-0107230_67	UniRef90	UniRef90_UPI001AE1261B	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0107230_67	eggNOG-mapper	768710.DesyoDRAFT_3997	TIGRFAM addiction module antitoxin, RelB DinJ family	NA
UHGV-0107230_67	Pfam	PF04221	RelB antitoxin	RelB
UHGV-0107230_67	NCBIFam	TIGR02384.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA
UHGV-0107230_67	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0107230_67	Structural annotation	PF04221, TIGR02384, COG3077	NA	NA