UHGV-0107232

Genome information

Genome length 42,125 bps

CDS count 76

Completeness 99.90% (high-quality)

geNomad score 0.9714

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107232
vOTU ID	vOTU-062305
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255505
BioSample	SAMEA3708861
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9714
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.4
Jumbo phage	No

Genome content
Genome length	42,125 bps
GC content	29.63%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	76
CDS density	87.54%
Average CDS length	488.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107232_1	KOfam	K14059	int; integrase	NA
UHGV-0107232_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0107232_1	UniRef90	UniRef90_R6DVW0	Phage integrase	NA
UHGV-0107232_1	eggNOG-mapper	857293.CAAU_0978	Belongs to the 'phage' integrase family	NA
UHGV-0107232_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107232_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0107232_1	Structural annotation	PF00589, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0107232_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0107232_2	PHROG	phrog_8036	NA	unknown function
UHGV-0107232_2	UniRef90	UniRef90_A0A354MCJ4	DNA damage-inducible protein D	NA
UHGV-0107232_2	eggNOG-mapper	1122173.AXVL01000018_gene461	SOS response	NA
UHGV-0107232_2	AcrCatalog	cluster_17589	NA	NA
UHGV-0107232_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0107232_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0107232_2	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0107232_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0107232_2	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0107232_3	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0107232_3	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0107232_3	UniRef90	UniRef90_UPI00188A6E6E	XRE family transcriptional regulator	NA
UHGV-0107232_3	eggNOG-mapper	1403313.AXBR01000018_gene3552	Peptidase S24-like	NA
UHGV-0107232_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0107232_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107232_3	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0107232_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0107232_3	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0107232_4	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0107232_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107232_4	UniRef90	UniRef90_R7IUI2	DNA-binding helix-turn-helix protein	NA
UHGV-0107232_4	eggNOG-mapper	556261.HMPREF0240_01212	An automated process has identified a potential problem with this gene model	NA
UHGV-0107232_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107232_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0107232_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0107232_5	PHROG	phrog_4621	NA	unknown function
UHGV-0107232_5	eggNOG-mapper	1196322.A370_02090	NA	NA
UHGV-0107232_6	PHROG	phrog_3292	NA	unknown function
UHGV-0107232_6	UniRef90	UniRef90_UPI000DE379A1	KTSC domain-containing protein	NA
UHGV-0107232_6	eggNOG-mapper	1121342.AUCO01000012_gene1704	KTSC domain	NA
UHGV-0107232_6	Pfam	PF13619	KTSC domain	KTSC
UHGV-0107232_6	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0107232_6	Structural annotation	PF13619	NA	NA
UHGV-0107232_7	Structural annotation	PF07471, NF033787	NA	NA
UHGV-0107232_10	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0107232_10	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0107232_10	UniRef90	UniRef90_UPI001A9EF159	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0107232_10	eggNOG-mapper	1145276.T479_16390	Transition state regulator Abh	NA
UHGV-0107232_10	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0107232_10	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0107232_10	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0107232_10	Structural annotation	PF04014, TIGR01439, COG2002	NA	NA
UHGV-0107232_12	PHROG	phrog_674	NA	unknown function
UHGV-0107232_12	UniRef90	UniRef90_UPI000553F60F	NA	NA
UHGV-0107232_12	eggNOG-mapper	665956.HMPREF1032_03103	NA	NA
UHGV-0107232_12	Pfam	PF07083	NA	DUF1351
UHGV-0107232_12	Structural annotation	PF07083	NA	NA
UHGV-0107232_13	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0107232_13	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0107232_13	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0107232_13	Pfam	PF03837	RecT family	RecT
UHGV-0107232_13	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0107232_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0107232_13	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0107232_14	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0107232_14	UniRef90	UniRef90_R5PYB3	Metallo-beta-lactamase domain protein	NA
UHGV-0107232_14	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0107232_14	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0107232_14	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0107232_14	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0107232_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0107232_16	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0107232_16	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0107232_16	Structural annotation	PF05772	NA	NA
UHGV-0107232_18	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107232_18	UniRef90	UniRef90_UPI0002D76449	DnaD domain protein	NA
UHGV-0107232_18	eggNOG-mapper	1140002.I570_01458	DnaD domain protein	NA
UHGV-0107232_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107232_18	Structural annotation	PF09681, NF006814, COG1846	NA	NA
UHGV-0107232_20	PHROG	phrog_1123	NA	unknown function
UHGV-0107232_20	UniRef90	UniRef90_A0A7U3NJT7	Putative transcriptional regulator	NA
UHGV-0107232_20	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0107232_20	Structural annotation	PF02002, TIGR03433, COG1695	NA	NA
UHGV-0107232_21	KOfam	K06940	NA	NA
UHGV-0107232_21	PHROG	phrog_32498	NA	unknown function
UHGV-0107232_21	UniRef90	UniRef90_UPI001570B1E1	YkgJ family cysteine cluster protein	NA
UHGV-0107232_21	eggNOG-mapper	397290.C810_01479	Putative zinc- or iron-chelating domain	NA
UHGV-0107232_21	Pfam	PF03692	Putative zinc- or iron-chelating domain	CxxCxxCC
UHGV-0107232_22	UniRef90	UniRef90_UPI0018A090A4	demethylase	NA
UHGV-0107232_23	Structural annotation	PF15188	NA	NA
UHGV-0107232_24	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0107232_24	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107232_24	UniRef90	UniRef90_UPI001C9B639A	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0107232_24	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0107232_24	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0107232_24	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0107232_24	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0107232_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107232_27	Structural annotation	PF09871, TIGR00739	NA	NA
UHGV-0107232_33	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0107232_33	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0107232_33	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0107232_33	Structural annotation	PF04545, MF_00962, TIGR02984, COG1191	NA	NA
UHGV-0107232_34	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107232_34	UniRef90	UniRef90_A0A2C5PXZ7	GIY-YIG domain-containing protein	NA
UHGV-0107232_34	eggNOG-mapper	1399942.U3PCR9_9CAUD	NUMOD3 motif (2 copies)	NA
UHGV-0107232_34	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0107232_34	Structural annotation	PF19835, PF07453, TIGR01453, COG2827	NA	NA
UHGV-0107232_38	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107232_38	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0107232_38	UniRef90	UniRef90_R6DVT6	Phage terminase large subunit PBSX family	NA
UHGV-0107232_38	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-0107232_38	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0107232_38	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0107232_38	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107232_38	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0107232_39	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107232_39	UniRef90	UniRef90_R6Y8H1	Minor capsid protein	NA
UHGV-0107232_39	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0107232_39	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0107232_39	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0107232_41	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0107232_41	UniRef90	UniRef90_R6YG84	CdiA_C domain-containing protein	NA
UHGV-0107232_41	eggNOG-mapper	1462526.BN990_03872	Phage minor capsid protein 2	NA
UHGV-0107232_41	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0107232_41	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0107232_41	COG	COG2369	NA	NA
UHGV-0107232_41	Structural annotation	PF06152, PF21814	NA	NA
UHGV-0107232_42	PHROG	phrog_3896	NA	unknown function
UHGV-0107232_42	UniRef90	UniRef90_A0A069AU92	Actin aggregate factor	NA
UHGV-0107232_44	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107232_44	UniRef90	UniRef90_A0A7J5G7S3	HNH endonuclease	NA
UHGV-0107232_44	eggNOG-mapper	1423814.HMPREF0549_1779	NUMOD4 motif	NA
UHGV-0107232_44	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0107232_44	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0107232_44	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0107232_44	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0107232_45	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0107232_45	UniRef90	UniRef90_R6XV28	Phage minor structural protein GP20	NA
UHGV-0107232_45	eggNOG-mapper	608534.GCWU000341_02294	Phage minor structural protein GP20	NA
UHGV-0107232_45	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0107232_45	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0107232_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-0107232_46	UniRef90	UniRef90_UPI000E5CD0B7	N4-gp56 family major capsid protein	NA
UHGV-0107232_46	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0107232_46	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0107232_46	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0107232_47	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0107232_47	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-0107232_48	PHROG	phrog_3366	NA	unknown function
UHGV-0107232_48	Pfam	PF20536	NA	DUF6751
UHGV-0107232_48	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0107232_49	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0107232_49	UniRef90	UniRef90_UPI000E44F835	minor capsid protein	NA
UHGV-0107232_49	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-0107232_49	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0107232_49	Structural annotation	PF11114	NA	NA
UHGV-0107232_50	PHROG	phrog_3266	tail completion	connector
UHGV-0107232_50	UniRef90	UniRef90_UPI001CF15A1F	chloramphenicol resistance protein	NA
UHGV-0107232_50	eggNOG-mapper	411473.RUMCAL_01934	NA	NA
UHGV-0107232_50	Structural annotation	PF12691	NA	NA
UHGV-0107232_51	PHROG	phrog_3099	NA	unknown function
UHGV-0107232_51	eggNOG-mapper	469596.HMPREF9488_01325	NA	NA
UHGV-0107232_51	Structural annotation	PF09393, TIGR02126, COG5437	NA	NA
UHGV-0107232_52	UniRef90	UniRef90_A0A5C4RZ16	Zinc-ribbon domain and TM2 domain-containing protein	NA
UHGV-0107232_52	COG	COG0265	Periplasmic serine protease, S1-C subfamily, contain C-terminal PDZ domain	NA
UHGV-0107232_53	UniRef90	UniRef90_A0A356AIQ0	RHH_1 domain-containing protein	NA
UHGV-0107232_53	eggNOG-mapper	1105031.HMPREF1141_1146	NA	NA
UHGV-0107232_53	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0107232_55	PHROG	phrog_2977	anti-repressor	transcription regulation
UHGV-0107232_55	UniRef90	UniRef90_R6H349	Bro-N domain-containing protein	NA
UHGV-0107232_55	eggNOG-mapper	1415774.U728_781	Phage antirepressor protein KilAC domain	NA
UHGV-0107232_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0107232_55	COG	COG3617	Prophage antirepressor	NA
UHGV-0107232_56	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0107232_56	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0107232_56	UniRef90	UniRef90_R6HDY3	Bro-N domain-containing protein	NA
UHGV-0107232_56	eggNOG-mapper	1033733.CAEK01000007_gene1684	BRO family, N-terminal domain protein	NA
UHGV-0107232_56	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0107232_56	COG	COG3617	Prophage antirepressor	NA
UHGV-0107232_56	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0107232_57	Structural annotation	PF10666	NA	NA
UHGV-0107232_58	PHROG	phrog_706	NA	unknown function
UHGV-0107232_58	UniRef90	UniRef90_UPI00067E77F7	Gp15 family bacteriophage protein	NA
UHGV-0107232_58	eggNOG-mapper	469596.HMPREF9488_01327	Bacteriophage Gp15 protein	NA
UHGV-0107232_58	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0107232_58	Structural annotation	PF06854	NA	NA
UHGV-0107232_59	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0107232_59	eggNOG-mapper	1123304.AQYA01000037_gene233	phage tail tape measure protein	NA
UHGV-0107232_59	COG	COG5412	Phage-related protein	NA
UHGV-0107232_59	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-0107232_60	PHROG	phrog_1194	NA	unknown function
UHGV-0107232_60	Structural annotation	PF20458, TIGR01633, COG4718	NA	NA
UHGV-0107232_61	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0107232_61	UniRef90	UniRef90_R7ITT1	Phage minor structural protein	NA
UHGV-0107232_61	eggNOG-mapper	469596.HMPREF9488_01330	NA	NA
UHGV-0107232_61	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0107232_61	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0107232_62	Structural annotation	PF09343	NA	NA
UHGV-0107232_63	PHROG	phrog_5717	tail protein	tail
UHGV-0107232_63	UniRef90	UniRef90_A0A4U8Q6R4	Baseplate wedge subunit and tail pin	NA
UHGV-0107232_63	eggNOG-mapper	556261.HMPREF0240_01282	NA	NA
UHGV-0107232_63	COG	COG4675	Phage tail collar domain	NA
UHGV-0107232_63	Structural annotation	COG4675	NA	NA
UHGV-0107232_64	eggNOG-mapper	508419.F8J177_9CAUD	NA	NA
UHGV-0107232_65	PHROG	phrog_13256	NA	unknown function
UHGV-0107232_65	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0107232_66	KOfam	K01446	PGRP; peptidoglycan recognition protein	NA
UHGV-0107232_66	PHROG	phrog_35436	amidase	lysis
UHGV-0107232_66	UniRef90	UniRef90_UPI001C3866C0	peptidoglycan recognition protein family protein	NA
UHGV-0107232_66	eggNOG-mapper	748727.CLJU_c32580	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107232_66	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0107232_66	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0107232_66	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0107232_66	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0107232_69	PHROG	phrog_36767	NA	unknown function
UHGV-0107232_69	UniRef90	UniRef90_A0A7V4T1A1	NA	NA
UHGV-0107232_69	eggNOG-mapper	179408.Osc7112_5073	NA	NA
UHGV-0107232_69	Pfam	PF10049	NA	DUF2283
UHGV-0107232_69	Structural annotation	PF10049, COG5428	NA	NA
UHGV-0107232_71	KOfam	K19449	sinR; XRE family transcriptional regulator, master regulator for biofilm formation	NA
UHGV-0107232_71	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0107232_71	UniRef90	UniRef90_R5YVI1	HTH-type transcriptional regulator SinR	NA
UHGV-0107232_71	eggNOG-mapper	86416.Clopa_3404	helix-turn-helix	NA
UHGV-0107232_71	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0107232_71	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0107232_71	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0107232_71	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0107232_71	Structural annotation	PF13443, MF_00535, NF041951, COG3655	NA	NA
UHGV-0107232_76	PHROG	phrog_1128	enoyl-CoA hydratase/carnithine racemase-like	moron, auxiliary metabolic gene and host takeover
UHGV-0107232_76	eggNOG-mapper	445335.CBN_1804	NA	NA