UHGV-0107242

Genome information

vOTU vOTU-019240

Genome length 46,997 bps

CDS count 64

Completeness 69.36% (medium-quality)

geNomad score 0.9526

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107242
vOTU ID	vOTU-019240
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255494
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	69.36% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9526
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	23.36
Jumbo phage	No

Genome content
Genome length	46,997 bps
GC content	34.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	94.29%
Average CDS length	696.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107242_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0107242_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0107242_1	UniRef90	UniRef90_R6PLG2	Resolvase	NA
UHGV-0107242_1	eggNOG-mapper	1267533.KB906740_gene313	Recombinase	NA
UHGV-0107242_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0107242_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0107242_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0107242_1	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-0107242_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107242_4	UniRef90	UniRef90_A0A1Q6TZ02	HTH_17 domain-containing protein	NA
UHGV-0107242_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0107242_7	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0107242_7	PHROG	phrog_1499	NA	unknown function
UHGV-0107242_7	UniRef90	UniRef90_A0A8J7H8V2	AAA family ATPase	NA
UHGV-0107242_7	eggNOG-mapper	1120998.AUFC01000030_gene2215	DNA recombination	NA
UHGV-0107242_7	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0107242_7	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0107242_9	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0107242_9	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0107242_9	UniRef90	UniRef90_A0A8D9PAN0	Recombinase	NA
UHGV-0107242_9	eggNOG-mapper	431943.CKL_0416	RecT family	NA
UHGV-0107242_9	Pfam	PF03837	RecT family	RecT
UHGV-0107242_9	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0107242_9	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0107242_10	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107242_10	UniRef90	UniRef90_A0A1Q6TYF7	NA	NA
UHGV-0107242_10	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0107242_10	Pfam	PF12684	NA	DUF3799
UHGV-0107242_10	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0107242_10	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0107242_11	PHROG	phrog_16826	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107242_11	UniRef90	UniRef90_A0A1Q6TYQ9	Phage_rep_O domain-containing protein	NA
UHGV-0107242_11	eggNOG-mapper	1304866.K413DRAFT_1200	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0107242_11	Pfam	PF04492	Bacteriophage replication protein O	Phage_rep_O
UHGV-0107242_11	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0107242_12	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0107242_12	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107242_12	UniRef90	UniRef90_A0A8D9PAL6	IstB_IS21 domain-containing protein	NA
UHGV-0107242_12	eggNOG-mapper	129009.Q9MBR8_9CAUD	IstB-like ATP binding protein	NA
UHGV-0107242_13	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0107242_13	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0107242_13	UniRef90	UniRef90_A0A1Q6TZF2	Methyltransferase	NA
UHGV-0107242_13	eggNOG-mapper	742740.HMPREF9474_02900	DNA methylase	NA
UHGV-0107242_13	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0107242_13	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0107242_13	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0107242_13	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0107242_15	PHROG	phrog_824	NA	unknown function
UHGV-0107242_15	UniRef90	UniRef90_A0A1Q6TYZ0	VRR-NUC domain-containing protein	NA
UHGV-0107242_15	eggNOG-mapper	1027273.GZ77_20585	VRR-NUC domain	NA
UHGV-0107242_15	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0107242_16	KOfam	K17398	DNMT3A; DNA (cytosine-5)-methyltransferase 3A [EC:2.1.1.37]	NA
UHGV-0107242_16	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0107242_16	UniRef90	UniRef90_A0A1Q6TZ68	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0107242_16	eggNOG-mapper	642492.Clole_1843	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0107242_16	PADLOC	oMTase_00013	orphan methyltransferase	RM
UHGV-0107242_16	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0107242_16	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0107242_16	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0107242_18	PHROG	phrog_2776	NA	unknown function
UHGV-0107242_18	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0107242_21	PHROG	phrog_625	NA	unknown function
UHGV-0107242_28	KOfam	K07691	comA; two-component system, NarL family, competent response regulator ComA	NA
UHGV-0107242_28	UniRef90	UniRef90_A0A1Q6TYR4	HTH luxR-type domain-containing protein	NA
UHGV-0107242_28	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0107242_28	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0107242_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107242_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0107242_32	UniRef90	UniRef90_A0A292SNZ1	PBSX family phage terminase large subunit	NA
UHGV-0107242_32	eggNOG-mapper	431943.CKL_1870	phage terminase, large subunit, PBSX family	NA
UHGV-0107242_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0107242_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107242_32	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0107242_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0107242_33	Structural annotation	PF14279	NA	NA
UHGV-0107242_35	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107242_35	UniRef90	UniRef90_A0A0R3JUW5	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0107242_35	eggNOG-mapper	1031288.AXAA01000048_gene764	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0107242_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0107242_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0107242_36	PHROG	phrog_4728	head morphogenesis	head and packaging
UHGV-0107242_36	UniRef90	UniRef90_A0A0C7NL75	Bacteriophage A118, Gp4, minor capsid	NA
UHGV-0107242_36	eggNOG-mapper	2754.EH55_07975	cell adhesion	NA
UHGV-0107242_36	COG	COG2369	NA	NA
UHGV-0107242_38	eggNOG-mapper	1031288.AXAA01000048_gene767	Phage minor structural protein GP20	NA
UHGV-0107242_39	PHROG	phrog_247	major head protein	head and packaging
UHGV-0107242_39	UniRef90	UniRef90_UPI00041DABCD	major capsid protein	NA
UHGV-0107242_39	eggNOG-mapper	1089548.KI783301_gene2616	NA	NA
UHGV-0107242_39	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0107242_39	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0107242_40	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0107242_40	eggNOG-mapper	86416.Clopa_3374	NA	NA
UHGV-0107242_40	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0107242_41	eggNOG-mapper	632518.Calow_0835	NA	NA
UHGV-0107242_41	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0107242_42	UniRef90	UniRef90_A0A832LCL1	HK97 gp10 family phage protein	NA
UHGV-0107242_42	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0107242_43	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0107242_44	PHROG	phrog_4971	major tail protein	tail
UHGV-0107242_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0107242_44	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0107242_46	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0107242_46	UniRef90	UniRef90_A0A1Q6TYW3	TMP_3 domain-containing protein	NA
UHGV-0107242_46	eggNOG-mapper	945713.IALB_0073	tape measure	NA
UHGV-0107242_46	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0107242_46	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0107242_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0107242_47	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0107242_47	UniRef90	UniRef90_UPI001B38B85F	NA	NA
UHGV-0107242_47	eggNOG-mapper	1454004.AW11_03417	NA	NA
UHGV-0107242_47	Pfam	PF09343	NA	DUF2460
UHGV-0107242_47	COG	COG5448	NA	NA
UHGV-0107242_47	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0107242_48	PHROG	phrog_778	tail assembly protein	tail
UHGV-0107242_48	UniRef90	UniRef90_A0A7D7NCB8	NA	NA
UHGV-0107242_48	eggNOG-mapper	1266925.JHVX01000006_gene2073	NA	NA
UHGV-0107242_48	Pfam	PF09931	NA	DUF2163
UHGV-0107242_48	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-0107242_48	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-0107242_48	COG	COG5449	NA	NA
UHGV-0107242_48	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-0107242_49	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0107242_49	UniRef90	UniRef90_A0A1Q6TYR2	NlpC/P60 domain-containing protein	NA
UHGV-0107242_49	eggNOG-mapper	62977.ACIAD2149	NlpC/P60 family	NA
UHGV-0107242_49	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0107242_49	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0107242_50	PHROG	phrog_1101	tail protein	tail
UHGV-0107242_50	UniRef90	UniRef90_A0A1Q6TYM9	Phage-tail_3 domain-containing protein	NA
UHGV-0107242_50	eggNOG-mapper	1485544.JQKP01000008_gene1693	Putative phage tail protein	NA
UHGV-0107242_50	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0107242_50	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0107242_50	Structural annotation	PF13550, NF040662, COG4733	NA	NA
UHGV-0107242_51	PHROG	phrog_11262	tail protein	tail
UHGV-0107242_51	UniRef90	UniRef90_A0A6M3J771	Putative tail protein	NA
UHGV-0107242_51	eggNOG-mapper	929794.CALV01000042_gene1427	to Laminin gamma-2 chain precursor (Kalinin nicein epiligrin 100 kDa subunit) (Laminin B2t chain) (Cell-scattering factor 140 kDa subunit) (CSF 140 kDa subunit) (Large adhesive scatter factor 140 kDa subunit) (Ladsin 140 kDa subunit) (Q13753 in Human)	NA
UHGV-0107242_52	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0107242_52	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0107242_52	UniRef90	UniRef90_A0A1Q6TYL3	Reverse transcriptase domain-containing protein	NA
UHGV-0107242_52	eggNOG-mapper	1031288.AXAA01000043_gene1778	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0107242_52	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0107242_52	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0107242_52	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0107242_52	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0107242_54	eggNOG-mapper	1094563.MCQ_01469	NA	NA
UHGV-0107242_57	PHROG	phrog_1158	tail assembly chaperone	tail
UHGV-0107242_57	Structural annotation	PF07087	NA	NA
UHGV-0107242_59	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0107242_59	PHROG	phrog_894	endolysin	lysis
UHGV-0107242_59	UniRef90	UniRef90_A0A6J5NI22	Peptidase M15A, C-terminal	NA
UHGV-0107242_59	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0107242_59	COG	COG3108	NA	NA
UHGV-0107242_59	Structural annotation	PF08291	NA	NA
UHGV-0107242_60	eggNOG-mapper	398767.Glov_0494	NA	NA
UHGV-0107242_60	Structural annotation	PF09499, COG4998	NA	NA
UHGV-0107242_62	KOfam	K07478	ycaJ; putative ATPase	NA
UHGV-0107242_62	PHROG	phrog_5846	clamp loader of DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0107242_62	UniRef90	UniRef90_R6PHJ9	AAA ATPase central domain protein	NA
UHGV-0107242_62	eggNOG-mapper	858215.Thexy_1452	AAA ATPase, central domain protein	NA
UHGV-0107242_62	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0107242_62	Pfam	PF16193	AAA C-terminal domain	AAA_assoc_2
UHGV-0107242_62	Pfam	PF12002	MgsA AAA+ ATPase C terminal	MgsA_C
UHGV-0107242_62	COG	COG2256	Replication-associated recombination protein RarA (DNA-dependent ATPase)	NA
UHGV-0107242_62	Structural annotation	PF12002, PF05496, PF16193, MF_01509, NF009882, COG2256	NA	NA