UHGV-0107369

Genome information

Genome length 40,146 bps

CDS count 70

Completeness 95.10% (high-quality)

geNomad score 0.9796

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107369
vOTU ID	vOTU-068159
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_254167
BioSample	SAMEA3708875
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.10% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9796
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.41
Jumbo phage	No

Genome content
Genome length	40,146 bps
GC content	53.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	88.90%
Average CDS length	513.77 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107369_1	PHROG	phrog_8680	NA	unknown function
UHGV-0107369_1	UniRef90	UniRef90_A0A844D688	NA	NA
UHGV-0107369_1	eggNOG-mapper	1423790.BN53_04265	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0107369_1	Pfam	PF14386	NA	DUF4417
UHGV-0107369_1	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0107369_1	Structural annotation	PF14386	NA	NA
UHGV-0107369_3	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0107369_3	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0107369_3	eggNOG-mapper	929506.CbC4_1219	NA	NA
UHGV-0107369_3	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0107369_3	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0107369_3	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0107369_7	PHROG	phrog_544	major head protein	head and packaging
UHGV-0107369_7	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0107369_7	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0107369_7	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0107369_9	PHROG	phrog_17977	NA	unknown function
UHGV-0107369_9	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0107369_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0107369_10	Structural annotation	PF13554	NA	NA
UHGV-0107369_11	PHROG	phrog_885	major tail protein	tail
UHGV-0107369_11	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0107369_11	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0107369_14	PHROG	phrog_9959	tail length tape measure protein	tail
UHGV-0107369_14	UniRef90	UniRef90_UPI001C038824	tape measure protein	NA
UHGV-0107369_14	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0107369_14	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0107369_14	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0107369_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0107369_14	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0107369_15	UniRef90	UniRef90_A0A415UCK7	MtfA protein	NA
UHGV-0107369_15	eggNOG-mapper	1111121.HMPREF1247_1241	NA	NA
UHGV-0107369_15	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0107369_16	PHROG	phrog_3558	tail protein	tail
UHGV-0107369_16	UniRef90	UniRef90_A0A8B3ALT8	Prophage_tail domain-containing protein	NA
UHGV-0107369_16	eggNOG-mapper	411460.RUMTOR_00484	Prophage endopeptidase tail	NA
UHGV-0107369_16	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0107369_16	COG	COG4926	Phage-related protein	NA
UHGV-0107369_16	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0107369_17	PHROG	phrog_11541	NA	unknown function
UHGV-0107369_17	UniRef90	UniRef90_A0A2H4J709	SGNH_hydro domain-containing protein	NA
UHGV-0107369_17	eggNOG-mapper	483218.BACPEC_02431	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-0107369_17	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0107369_17	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0107369_18	KOfam	K07273	acm; lysozyme	NA
UHGV-0107369_18	PHROG	phrog_291	endolysin	lysis
UHGV-0107369_18	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0107369_18	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0107369_18	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0107369_18	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0107369_18	Structural annotation	PF01183, TIGR04053, COG3757	NA	NA
UHGV-0107369_19	PHROG	phrog_1863	NA	unknown function
UHGV-0107369_19	eggNOG-mapper	718252.FP2_04900	NA	NA
UHGV-0107369_20	PHROG	phrog_15303	NA	unknown function
UHGV-0107369_21	Structural annotation	PF07374, MF_00245, NF001072, COG2739	NA	NA
UHGV-0107369_22	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0107369_22	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0107369_22	UniRef90	UniRef90_A0A1H8KVS3	Anti-repressor protein	NA
UHGV-0107369_22	eggNOG-mapper	663952.SDD27957_09340	AntA/AntB antirepressor	NA
UHGV-0107369_22	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0107369_22	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0107369_22	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0107369_22	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0107369_23	Structural annotation	PF07342	NA	NA
UHGV-0107369_24	eggNOG-mapper	665956.HMPREF1032_00120	NA	NA
UHGV-0107369_24	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0107369_25	UniRef90	UniRef90_UPI000C7592F8	ribbon-helix-helix protein, CopG family	NA
UHGV-0107369_25	eggNOG-mapper	663952.SDD27957_09060	NA	NA
UHGV-0107369_25	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0107369_25	Structural annotation	PF01402, NF041793, COG3905	NA	NA
UHGV-0107369_26	PHROG	phrog_3754	NA	unknown function
UHGV-0107369_26	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0107369_27	PHROG	phrog_21718	NA	unknown function
UHGV-0107369_27	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0107369_28	PHROG	phrog_22984	NA	unknown function
UHGV-0107369_29	PHROG	phrog_16490	NA	unknown function
UHGV-0107369_29	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0107369_31	PHROG	phrog_20016	NA	unknown function
UHGV-0107369_31	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0107369_31	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0107369_31	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0107369_32	Structural annotation	PF12510	NA	NA
UHGV-0107369_34	KOfam	K14059	int; integrase	NA
UHGV-0107369_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0107369_34	UniRef90	UniRef90_A0A6N7TNQ4	Tyrosine-type recombinase/integrase	NA
UHGV-0107369_34	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0107369_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107369_34	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0107369_34	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0107369_35	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0107369_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107369_35	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0107369_38	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0107369_38	UniRef90	UniRef90_UPI000F643789	Ltp family lipoprotein	NA
UHGV-0107369_38	eggNOG-mapper	658086.HMPREF0994_06731	Host cell surface-exposed lipoprotein	NA
UHGV-0107369_38	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0107369_38	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0107369_38	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0107369_38	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0107369_41	Pfam	PF09106	Elongation factor SelB, winged helix	SelB-wing_2
UHGV-0107369_41	Structural annotation	PF09202, MF_01819, NF041230, COG1321	NA	NA
UHGV-0107369_42	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107369_42	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0107369_42	eggNOG-mapper	198094.BA_3829	Helix-turn-helix XRE-family like proteins	NA
UHGV-0107369_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107369_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107369_42	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0107369_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0107369_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107369_43	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0107369_43	eggNOG-mapper	1268072.PSAB_01325	Transcriptional regulator	NA
UHGV-0107369_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107369_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107369_43	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0107369_44	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107369_44	UniRef90	UniRef90_UPI001CCCB47B	GIY-YIG nuclease family protein	NA
UHGV-0107369_44	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0107369_44	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0107369_44	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0107369_44	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0107369_45	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0107369_45	UniRef90	UniRef90_UPI00156FBCEE	ORF6C domain-containing protein	NA
UHGV-0107369_45	eggNOG-mapper	411490.ANACAC_00813	BRO family, N-terminal domain	NA
UHGV-0107369_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0107369_45	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0107369_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0107369_45	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0107369_48	PHROG	phrog_4433	NA	unknown function
UHGV-0107369_48	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0107369_48	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0107369_48	Structural annotation	PF12120, NF007410	NA	NA
UHGV-0107369_49	Structural annotation	PF10743, NF033787	NA	NA
UHGV-0107369_54	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0107369_54	UniRef90	UniRef90_UPI0011C8A287	recombinase RecT	NA
UHGV-0107369_54	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0107369_54	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0107369_55	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0107369_55	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107369_55	UniRef90	UniRef90_D4K451	Single-stranded DNA-binding protein	NA
UHGV-0107369_55	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0107369_55	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0107369_55	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0107369_55	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107369_55	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0107369_55	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0107369_56	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0107369_56	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107369_56	UniRef90	UniRef90_A0A6N7TLH4	DnaD domain protein	NA
UHGV-0107369_56	eggNOG-mapper	877411.JMMA01000002_gene2292	NA	NA
UHGV-0107369_56	Pfam	PF19808	NA	DUF6291
UHGV-0107369_56	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0107369_56	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0107369_56	Structural annotation	PF19808, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0107369_57	Structural annotation	PF11417	NA	NA
UHGV-0107369_58	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0107369_60	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0107369_60	Structural annotation	NF041588	NA	NA
UHGV-0107369_63	PHROG	phrog_3136	NA	unknown function
UHGV-0107369_63	UniRef90	UniRef90_A0A6N7TMC2	ASCH domain-containing protein	NA
UHGV-0107369_63	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0107369_63	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0107369_64	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0107369_64	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107369_64	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0107369_64	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0107369_64	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0107369_64	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0107369_64	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0107369_66	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0107369_66	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0107369_67	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0107369_67	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0107369_67	Structural annotation	PF04218	NA	NA
UHGV-0107369_68	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107369_68	PHROG	phrog_10250	NA	unknown function
UHGV-0107369_68	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0107369_68	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0107369_68	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0107369_68	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0107369_68	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107369_68	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0107369_69	PHROG	phrog_64	portal protein	head and packaging
UHGV-0107369_69	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0107369_69	eggNOG-mapper	1042156.CXIVA_01850	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0107369_69	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0107369_69	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA