UHGV-0107417

Genome information

Genome length 35,430 bps

CDS count 58

Completeness 94.51% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107417
vOTU ID	vOTU-078692
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249270
BioSample	SAMEA3708871
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.51% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.05
Jumbo phage	No

Genome content
Genome length	35,430 bps
GC content	53.70%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.53%
Average CDS length	563.64 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107417_1	UniRef90	UniRef90_UPI000C854EB7	BppU family phage baseplate upper protein	NA
UHGV-0107417_1	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0107417_2	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0107417_2	UniRef90	UniRef90_A0A1C6H6B4	Phage-related protein	NA
UHGV-0107417_2	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0107417_2	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0107417_2	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0107417_2	COG	COG4926	Phage-related protein	NA
UHGV-0107417_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0107417_3	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0107417_3	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0107417_3	eggNOG-mapper	1160721.RBI_I01575	Phage tail protein	NA
UHGV-0107417_3	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0107417_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0107417_3	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0107417_4	PHROG	phrog_5755	tail length tape measure protein	tail
UHGV-0107417_4	eggNOG-mapper	742738.HMPREF9460_04078	domain protein	NA
UHGV-0107417_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0107417_4	Structural annotation	PF10145, COG5280	NA	NA
UHGV-0107417_5	eggNOG-mapper	1280681.AUJZ01000038_gene340	NA	NA
UHGV-0107417_5	Structural annotation	PF11836	NA	NA
UHGV-0107417_6	PHROG	phrog_88	major tail protein	tail
UHGV-0107417_6	UniRef90	UniRef90_A0A3D5L5I4	Phage tail protein	NA
UHGV-0107417_6	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0107417_6	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0107417_6	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0107417_7	eggNOG-mapper	887929.HMP0721_1261	NA	NA
UHGV-0107417_7	Structural annotation	PF20765	NA	NA
UHGV-0107417_8	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0107417_8	UniRef90	UniRef90_UPI00148B2708	HK97 gp10 family phage protein	NA
UHGV-0107417_8	eggNOG-mapper	198094.BA_0472	NA	NA
UHGV-0107417_8	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0107417_8	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0107417_9	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0107417_9	UniRef90	UniRef90_UPI000E207DD7	phage head closure protein	NA
UHGV-0107417_9	eggNOG-mapper	1226322.HMPREF1545_00118	NA	NA
UHGV-0107417_9	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0107417_9	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0107417_9	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0107417_10	PHROG	phrog_5223	neck protein	connector
UHGV-0107417_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0107417_11	PHROG	phrog_10	major head protein	head and packaging
UHGV-0107417_11	UniRef90	UniRef90_A0A1C5W5F9	Phage major capsid protein, HK97 family	NA
UHGV-0107417_11	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0107417_11	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0107417_11	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0107417_11	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0107417_12	KOfam	K06904	NA	NA
UHGV-0107417_12	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0107417_12	UniRef90	UniRef90_R6CCZ0	Phage prohead protease HK97 family	NA
UHGV-0107417_12	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-0107417_12	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0107417_12	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0107417_12	COG	COG3740	Phage head maturation protease	NA
UHGV-0107417_12	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0107417_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0107417_13	UniRef90	UniRef90_A0A1H4BNH5	Phage portal protein, HK97 family	NA
UHGV-0107417_13	eggNOG-mapper	1235755.ANAM01000006_gene2373	Phage portal protein	NA
UHGV-0107417_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0107417_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0107417_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0107417_14	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0107417_14	UniRef90	UniRef90_A0A1H4BNS6	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0107417_14	eggNOG-mapper	1160721.RBI_I01585	large subunit	NA
UHGV-0107417_14	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0107417_14	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0107417_14	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0107417_14	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0107417_15	PHROG	phrog_1066	NA	unknown function
UHGV-0107417_15	eggNOG-mapper	1203606.HMPREF1526_01333	NA	NA
UHGV-0107417_15	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0107417_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0107417_16	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107417_16	UniRef90	UniRef90_UPI001D11B139	HNH endonuclease	NA
UHGV-0107417_16	eggNOG-mapper	1444310.JANV01000004_gene2686	HNH endonuclease	NA
UHGV-0107417_16	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107417_16	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0107417_17	eggNOG-mapper	411459.RUMOBE_01385	NA	NA
UHGV-0107417_17	AcrCatalog	cluster_11670	NA	NA
UHGV-0107417_18	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0107417_18	PHROG	phrog_18293	methyltransferase	other
UHGV-0107417_18	UniRef90	UniRef90_UPI000E098A24	site-specific DNA-methyltransferase	NA
UHGV-0107417_18	eggNOG-mapper	148814.JI66_07095	DNA methylase	NA
UHGV-0107417_18	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0107417_18	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0107417_18	COG	COG0863	DNA modification methylase	NA
UHGV-0107417_18	Structural annotation	PF11599, NF010253, COG0863	NA	NA
UHGV-0107417_19	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0107417_19	UniRef90	UniRef90_A0A661CSC3	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0107417_19	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0107417_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0107417_21	UniRef90	UniRef90_A0A417H740	NA	NA
UHGV-0107417_21	Pfam	PF04448	NA	DUF551
UHGV-0107417_23	PHROG	phrog_16304	NA	unknown function
UHGV-0107417_23	UniRef90	UniRef90_UPI001E36D421	NA	NA
UHGV-0107417_23	eggNOG-mapper	1139219.I569_00067	DnaD domain protein	NA
UHGV-0107417_23	Pfam	PF19808	NA	DUF6291
UHGV-0107417_23	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107417_23	Structural annotation	PF19808	NA	NA
UHGV-0107417_24	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107417_24	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-0107417_24	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0107417_24	Pfam	PF06356	NA	DUF1064
UHGV-0107417_24	Structural annotation	PF06356	NA	NA
UHGV-0107417_25	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0107417_25	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107417_25	UniRef90	UniRef90_A0A2V2CEG7	Single-stranded DNA-binding protein	NA
UHGV-0107417_25	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0107417_25	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0107417_25	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0107417_25	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107417_25	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0107417_25	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0107417_26	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0107417_26	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0107417_26	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0107417_26	Structural annotation	PF05772	NA	NA
UHGV-0107417_27	PHROG	phrog_14970	NA	unknown function
UHGV-0107417_27	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0107417_27	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0107417_27	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0107417_27	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0107417_29	Structural annotation	PF00412	NA	NA
UHGV-0107417_30	PHROG	phrog_5070	NA	unknown function
UHGV-0107417_30	UniRef90	UniRef90_B0PAM0	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0107417_30	eggNOG-mapper	445972.ANACOL_01820	COG NOG06285 non supervised orthologous group	NA
UHGV-0107417_30	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0107417_30	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0107417_30	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0107417_33	UniRef90	UniRef90_UPI000F0633F9	DNA-binding protein	NA
UHGV-0107417_33	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0107417_33	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0107417_36	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107417_36	UniRef90	UniRef90_A0A1C5PSE5	Predicted transcriptional regulator	NA
UHGV-0107417_36	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0107417_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107417_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0107417_37	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0107417_37	UniRef90	UniRef90_A0A7C6Q977	S-layer homology domain-containing protein	NA
UHGV-0107417_37	eggNOG-mapper	411467.BACCAP_04702	S-layer homology domain	NA
UHGV-0107417_37	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0107417_37	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0107417_37	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0107417_39	Structural annotation	PF13560, TIGR03070, COG3655	NA	NA
UHGV-0107417_40	KOfam	K14059	int; integrase	NA
UHGV-0107417_40	PHROG	phrog_1	integrase	integration and excision
UHGV-0107417_40	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0107417_40	eggNOG-mapper	698758.AXY_01580	Phage integrase family	NA
UHGV-0107417_40	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0107417_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107417_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0107417_40	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0107417_41	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0107417_42	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0107417_43	PHROG	phrog_16490	NA	unknown function
UHGV-0107417_43	eggNOG-mapper	397290.C810_05212	NA	NA
UHGV-0107417_44	PHROG	phrog_22984	NA	unknown function
UHGV-0107417_46	Structural annotation	COG4451	NA	NA
UHGV-0107417_49	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0107417_49	PHROG	phrog_2104	NA	unknown function
UHGV-0107417_49	UniRef90	UniRef90_A0A355NLF8	DNA-binding protein	NA
UHGV-0107417_49	eggNOG-mapper	1121296.JONJ01000006_gene2191	Helix-turn-helix XRE-family like proteins	NA
UHGV-0107417_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107417_49	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-0107417_50	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107417_50	UniRef90	UniRef90_A0A1I3T111	AP2 domain-containing protein	NA
UHGV-0107417_50	eggNOG-mapper	478749.BRYFOR_05054	AP2 domain protein	NA
UHGV-0107417_50	Structural annotation	PF18337, PF00847	NA	NA
UHGV-0107417_51	UniRef90	UniRef90_A0A350H2J1	HTH luxR-type domain-containing protein	NA
UHGV-0107417_51	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0107417_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0107417_52	PHROG	phrog_291	endolysin	lysis
UHGV-0107417_52	UniRef90	UniRef90_A0A6S6X8V6	Putative Lysozyme	NA
UHGV-0107417_52	eggNOG-mapper	1415775.U729_2621	Glycosyl hydrolases family 25	NA
UHGV-0107417_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0107417_52	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0107417_52	Pfam	PF19085	Choline-binding repeat	Choline_bind_2
UHGV-0107417_52	COG	COG3103	NA	NA
UHGV-0107417_52	Structural annotation	PF01183, PF19127, TIGR04035, TIGR04303, COG3757	NA	NA
UHGV-0107417_53	PHROG	phrog_1129	holin	lysis
UHGV-0107417_53	UniRef90	UniRef90_A0A1H3XEH1	Phage holin family Hol44, holin superfamily V	NA
UHGV-0107417_53	eggNOG-mapper	1226322.HMPREF1545_00069	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0107417_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0107417_53	Structural annotation	PF06946	NA	NA
UHGV-0107417_54	PHROG	phrog_1863	NA	unknown function
UHGV-0107417_54	eggNOG-mapper	748224.HMPREF9436_00408	NA	NA
UHGV-0107417_55	PHROG	phrog_2310	NA	unknown function
UHGV-0107417_57	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0107417_57	eggNOG-mapper	1226322.HMPREF1545_00642	NA	NA
UHGV-0107417_57	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0107417_58	KOfam	K03169	topB; DNA topoisomerase III [EC:5.6.2.1]	NA
UHGV-0107417_58	PHROG	phrog_13226	NA	unknown function
UHGV-0107417_58	UniRef90	UniRef90_A6NXR7	Topoisom_bac domain-containing protein	NA
UHGV-0107417_58	eggNOG-mapper	1226322.HMPREF1545_00641	Bacterial DNA topoisomeraes I ATP-binding domain	NA
UHGV-0107417_58	PADLOC	DpdF_00011	DpdF	DPD
UHGV-0107417_58	Pfam	PF01131	DNA topoisomerase	Topoisom_bac
UHGV-0107417_58	COG	COG0550	DNA topoisomerase IA	NA