UHGV-0107436

Genome information

vOTU vOTU-041963

Genome length 38,039 bps

CDS count 51

Completeness 53.07% (medium-quality)

geNomad score 0.9654

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107436
vOTU ID	vOTU-041963
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_240985
BioSample	SAMEA3708684
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	53.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9654
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.99
Jumbo phage	No

Genome content
Genome length	38,039 bps
GC content	52.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	90.35%
Average CDS length	676.29 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107436_1	PHROG	phrog_2398	NA	unknown function
UHGV-0107436_1	eggNOG-mapper	1500301.JQMF01000003_gene4252	NA	NA
UHGV-0107436_2	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0107436_2	UniRef90	UniRef90_A0A8G3N258	Phage tail protein	NA
UHGV-0107436_2	eggNOG-mapper	391613.RTM1035_19771	NA	NA
UHGV-0107436_3	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0107436_3	eggNOG-mapper	1470591.BW41_00266	IMG reference gene	NA
UHGV-0107436_7	PHROG	phrog_1101	tail protein	tail
UHGV-0107436_7	UniRef90	UniRef90_G9PX89	Phage-tail_3 domain-containing protein	NA
UHGV-0107436_7	eggNOG-mapper	457415.HMPREF1006_00478	cellulase activity	NA
UHGV-0107436_7	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0107436_7	Pfam	PF09327	NA	DUF1983
UHGV-0107436_7	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0107436_8	KOfam	K13695	nlpC; probable lipoprotein NlpC	NA
UHGV-0107436_8	PHROG	phrog_329	minor tail protein	tail
UHGV-0107436_8	UniRef90	UniRef90_A0A1I4N0I4	NlpC/P60 domain-containing protein	NA
UHGV-0107436_8	eggNOG-mapper	457415.HMPREF1006_00477	cysteine-type peptidase activity	NA
UHGV-0107436_8	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0107436_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0107436_8	Structural annotation	PF00877, TIGR02219, COG0791	NA	NA
UHGV-0107436_9	PHROG	phrog_778	tail assembly protein	tail
UHGV-0107436_9	UniRef90	UniRef90_UPI00195E3FBB	NA	NA
UHGV-0107436_9	eggNOG-mapper	457415.HMPREF1006_00476	NA	NA
UHGV-0107436_9	Pfam	PF09931	NA	DUF2163
UHGV-0107436_9	Pfam	PF09356	Phage conserved hypothetical protein BR0599	Phage_BR0599
UHGV-0107436_9	NCBIFam	TIGR02218.1	phage conserved hypothetical protein BR0599	NA
UHGV-0107436_9	COG	COG5449	NA	NA
UHGV-0107436_9	Structural annotation	PF09931, PF09356, TIGR02218, COG5449	NA	NA
UHGV-0107436_10	PHROG	phrog_2913	glycoside hydrolase	other
UHGV-0107436_10	UniRef90	UniRef90_G9PX86	TIGR02217 family protein	NA
UHGV-0107436_10	eggNOG-mapper	457415.HMPREF1006_00475	NA	NA
UHGV-0107436_10	Pfam	PF09343	NA	DUF2460
UHGV-0107436_10	COG	COG5448	NA	NA
UHGV-0107436_10	Structural annotation	PF09343, TIGR02217, COG5448	NA	NA
UHGV-0107436_11	PHROG	phrog_12798	NA	unknown function
UHGV-0107436_11	UniRef90	UniRef90_A0A073J0E4	TMP_3 domain-containing protein	NA
UHGV-0107436_11	eggNOG-mapper	2754.EH55_13250	tape measure	NA
UHGV-0107436_11	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0107436_11	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0107436_11	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0107436_11	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0107436_12	eggNOG-mapper	1123288.SOV_2c03530	NA	NA
UHGV-0107436_13	eggNOG-mapper	1123288.SOV_2c03540	NA	NA
UHGV-0107436_13	Structural annotation	PF19591	NA	NA
UHGV-0107436_14	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0107436_14	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0107436_14	UniRef90	UniRef90_A0A073IN32	Toxin HicA	NA
UHGV-0107436_14	eggNOG-mapper	2754.EH55_13235	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0107436_14	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0107436_14	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0107436_14	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0107436_15	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0107436_15	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0107436_15	UniRef90	UniRef90_A0A073IN07	Antitoxin HicB	NA
UHGV-0107436_15	eggNOG-mapper	2754.EH55_13230	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0107436_15	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0107436_15	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0107436_15	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0107436_16	PHROG	phrog_1407	major tail protein	tail
UHGV-0107436_16	UniRef90	UniRef90_G9PX82	TP901-1 family phage major tail protein	NA
UHGV-0107436_16	eggNOG-mapper	457415.HMPREF1006_00471	Phage tail tube protein	NA
UHGV-0107436_16	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0107436_16	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0107436_16	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0107436_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0107436_17	PHROG	phrog_176	tail terminator	connector
UHGV-0107436_17	UniRef90	UniRef90_UPI001032C584	NA	NA
UHGV-0107436_17	eggNOG-mapper	457415.HMPREF1006_00470	NA	NA
UHGV-0107436_17	Pfam	PF11367	NA	DUF3168
UHGV-0107436_17	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0107436_18	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0107436_18	UniRef90	UniRef90_UPI000F0C5A82	HK97 gp10 family phage protein	NA
UHGV-0107436_18	eggNOG-mapper	2754.EH55_13210	Phage virion morphogenesis	NA
UHGV-0107436_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0107436_18	COG	COG5005	NA	NA
UHGV-0107436_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0107436_19	PHROG	phrog_25	head closure Hc1	connector
UHGV-0107436_19	UniRef90	UniRef90_UPI001E3E4C6F	phage head closure protein	NA
UHGV-0107436_19	eggNOG-mapper	2754.EH55_13205	Phage head-tail joining protein	NA
UHGV-0107436_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0107436_19	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0107436_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0107436_20	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0107436_20	UniRef90	UniRef90_UPI00164A2E93	head-tail connector protein	NA
UHGV-0107436_20	eggNOG-mapper	2754.EH55_13200	Phage gp6-like head-tail connector protein	NA
UHGV-0107436_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0107436_20	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0107436_20	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0107436_21	eggNOG-mapper	2754.EH55_13195	NA	NA
UHGV-0107436_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-0107436_22	UniRef90	UniRef90_A0A1Y4G8S3	Phage major capsid protein	NA
UHGV-0107436_22	eggNOG-mapper	2754.EH55_13190	Phage capsid family	NA
UHGV-0107436_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0107436_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0107436_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0107436_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0107436_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0107436_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0107436_23	UniRef90	UniRef90_A0A073INI2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0107436_23	eggNOG-mapper	2754.EH55_13185	serine-type endopeptidase activity	NA
UHGV-0107436_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0107436_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0107436_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-0107436_24	UniRef90	UniRef90_A0A1Y4G7E7	Phage portal protein	NA
UHGV-0107436_24	eggNOG-mapper	2754.EH55_13180	Portal protein	NA
UHGV-0107436_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0107436_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0107436_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0107436_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0107436_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0107436_25	UniRef90	UniRef90_UPI0012BC252C	terminase large subunit	NA
UHGV-0107436_25	eggNOG-mapper	2754.EH55_13175	Terminase	NA
UHGV-0107436_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0107436_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0107436_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0107436_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0107436_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0107436_26	UniRef90	UniRef90_A0A1I7JUR9	Phage terminase, small subunit, putative, P27 family	NA
UHGV-0107436_26	eggNOG-mapper	1121271.AUCM01000039_gene4217	Phage terminase, small subunit	NA
UHGV-0107436_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0107436_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0107436_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0107436_27	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0107436_27	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0107436_27	UniRef90	UniRef90_A0A1Y4GB87	Methyltransferase	NA
UHGV-0107436_27	eggNOG-mapper	2754.EH55_02975	N-4 methylation of cytosine	NA
UHGV-0107436_27	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0107436_27	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0107436_27	COG	COG0863	DNA modification methylase	NA
UHGV-0107436_27	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0107436_32	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0107436_32	PHROG	phrog_2249	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0107436_32	UniRef90	UniRef90_UPI0004AE24D0	AAA family ATPase	NA
UHGV-0107436_32	eggNOG-mapper	1536592.A0A088F8A2_9VIRU	hydrolase activity, acting on acid anhydrides	NA
UHGV-0107436_32	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0107436_32	Pfam	PF13481	AAA domain	AAA_25
UHGV-0107436_33	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0107436_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0107436_33	UniRef90	UniRef90_UPI0004ACFBF2	DEAD/DEAH box helicase	NA
UHGV-0107436_33	eggNOG-mapper	1536592.A0A088F773_9VIRU	N-methyltransferase activity	NA
UHGV-0107436_33	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0107436_33	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0107436_33	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0107436_33	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0107436_34	PHROG	phrog_1990	Cas4-domain exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107436_34	UniRef90	UniRef90_A0A6J5MZH3	PDDEXK_1 domain-containing protein	NA
UHGV-0107436_34	eggNOG-mapper	1536592.A0A088FB34_9VIRU	nuclease activity	NA
UHGV-0107436_35	PHROG	phrog_2300	NA	unknown function
UHGV-0107436_35	UniRef90	UniRef90_UPI0006856353	NA	NA
UHGV-0107436_35	eggNOG-mapper	1536592.A0A088F739_9VIRU	NA	NA
UHGV-0107436_35	Pfam	PF05037	NA	DUF669
UHGV-0107436_35	Structural annotation	PF05037, MF_00292, NF006039, COG2053	NA	NA
UHGV-0107436_36	PHROG	phrog_2480	NA	unknown function
UHGV-0107436_36	eggNOG-mapper	1437882.AZRU01000111_gene4955	NA	NA
UHGV-0107436_37	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0107436_37	UniRef90	UniRef90_A0A6J5N4N1	Phage_P_loop, phage nucleotide-binding protein	NA
UHGV-0107436_37	eggNOG-mapper	1536592.A0A088F776_9VIRU	AAA domain	NA
UHGV-0107436_37	Pfam	PF13479	AAA domain	AAA_24
UHGV-0107436_37	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0107436_42	UniRef90	UniRef90_A0A1B2I6A2	HTH_17 domain-containing protein	NA
UHGV-0107436_42	eggNOG-mapper	991905.SL003B_1706	NA	NA
UHGV-0107436_42	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0107436_48	UniRef90	UniRef90_UPI000A04E020	helix-turn-helix transcriptional regulator	NA
UHGV-0107436_48	eggNOG-mapper	1273103.NM10_03301	NA	NA
UHGV-0107436_48	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0107436_48	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0107436_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107436_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0107436_49	UniRef90	UniRef90_UPI0005511E7C	helix-turn-helix domain-containing protein	NA
UHGV-0107436_49	eggNOG-mapper	1262914.BN533_01956	Helix-turn-helix XRE-family like proteins	NA
UHGV-0107436_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107436_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0107436_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0107436_51	UniRef90	UniRef90_UPI00055967CA	SYNERG-CTERM sorting domain-containing protein	NA
UHGV-0107436_51	NCBIFam	TIGR04564.1	Synerg-CTERM sorting domain-containing protein	NA