UHGV-0107460

Genome information

Genome length 42,562 bps

CDS count 78

Completeness 100.00% (complete)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107460
vOTU ID	vOTU-045559
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_247548
BioSample	SAMEA3708873
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	58.85
Jumbo phage	No

Genome content
Genome length	42,562 bps
GC content	50.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	78
CDS density	90.51%
Average CDS length	498.50 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107460_1	PHROG	phrog_4433	NA	unknown function
UHGV-0107460_1	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0107460_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0107460_9	UniRef90	UniRef90_A0A316SDW5	Transcriptional regulator	NA
UHGV-0107460_9	eggNOG-mapper	1051631.F8HGP8_9CAUD	NA	NA
UHGV-0107460_9	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0107460_10	UniRef90	UniRef90_UPI0018AA364F	helix-turn-helix transcriptional regulator	NA
UHGV-0107460_10	eggNOG-mapper	718252.FP2_04820	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0107460_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107460_10	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107460_10	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0107460_12	UniRef90	UniRef90_UPI001EDE047F	phage minor capsid protein	NA
UHGV-0107460_12	Structural annotation	PF06152	NA	NA
UHGV-0107460_14	UniRef90	UniRef90_C7XQD8	bPH_2 domain-containing protein	NA
UHGV-0107460_14	eggNOG-mapper	469604.HMPREF0946_01104	Bacterial PH domain	NA
UHGV-0107460_14	Pfam	PF03703	Bacterial PH domain	bPH_2
UHGV-0107460_14	COG	COG3428	NA	NA
UHGV-0107460_15	KOfam	K14059	int; integrase	NA
UHGV-0107460_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0107460_15	UniRef90	UniRef90_A0A417H7X9	Site-specific integrase	NA
UHGV-0107460_15	eggNOG-mapper	1408437.JNJN01000084_gene1284	Belongs to the 'phage' integrase family	NA
UHGV-0107460_15	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0107460_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107460_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0107460_15	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0107460_16	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0107460_17	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0107460_18	PHROG	phrog_16490	NA	unknown function
UHGV-0107460_18	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0107460_20	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0107460_22	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0107460_22	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0107460_23	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0107460_23	PHROG	phrog_670	endolysin	lysis
UHGV-0107460_23	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107460_23	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0107460_23	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0107460_23	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0107460_23	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0107460_24	PHROG	phrog_297	holin	lysis
UHGV-0107460_24	UniRef90	UniRef90_A0A417HAK5	Phage holin	NA
UHGV-0107460_24	eggNOG-mapper	1408437.JNJN01000039_gene392	COG COG5546 Small integral membrane protein	NA
UHGV-0107460_24	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0107460_24	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0107460_24	COG	COG5546	NA	NA
UHGV-0107460_24	Structural annotation	COG5546	NA	NA
UHGV-0107460_27	PHROG	phrog_1382	NA	unknown function
UHGV-0107460_27	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0107460_28	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107460_28	UniRef90	UniRef90_A0A173R8Z7	Group I intron endonuclease	NA
UHGV-0107460_28	eggNOG-mapper	476272.RUMHYD_01755	GIY-YIG type nucleases (URI domain)	NA
UHGV-0107460_28	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0107460_28	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0107460_28	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0107460_28	COG	COG3860	NA	NA
UHGV-0107460_28	Structural annotation	PF19835, PF07460, TIGR01453	NA	NA
UHGV-0107460_29	PHROG	phrog_24451	NA	unknown function
UHGV-0107460_29	eggNOG-mapper	1408437.JNJN01000040_gene189	NA	NA
UHGV-0107460_30	eggNOG-mapper	2754.EH55_00535	NA	NA
UHGV-0107460_30	Structural annotation	PF20086, TIGR04362	NA	NA
UHGV-0107460_31	PHROG	phrog_32744	NA	unknown function
UHGV-0107460_31	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0107460_31	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0107460_32	PHROG	phrog_1194	NA	unknown function
UHGV-0107460_32	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0107460_32	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0107460_33	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0107460_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0107460_33	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-0107460_33	eggNOG-mapper	1158612.I580_01921	SLT domain	NA
UHGV-0107460_33	COG	COG1511	NA	NA
UHGV-0107460_34	PHROG	phrog_706	NA	unknown function
UHGV-0107460_34	UniRef90	UniRef90_UPI00164ABC94	Gp15 family bacteriophage protein	NA
UHGV-0107460_34	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0107460_34	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0107460_34	Structural annotation	PF06854	NA	NA
UHGV-0107460_35	PHROG	phrog_11299	NA	unknown function
UHGV-0107460_35	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-0107460_35	Structural annotation	PF10666	NA	NA
UHGV-0107460_36	PHROG	phrog_3099	NA	unknown function
UHGV-0107460_36	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0107460_36	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0107460_37	PHROG	phrog_3266	tail completion	connector
UHGV-0107460_37	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0107460_37	Structural annotation	PF12691	NA	NA
UHGV-0107460_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0107460_38	UniRef90	UniRef90_UPI0006C7F62A	minor capsid protein	NA
UHGV-0107460_38	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0107460_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0107460_38	Structural annotation	PF11114	NA	NA
UHGV-0107460_39	PHROG	phrog_3366	NA	unknown function
UHGV-0107460_39	eggNOG-mapper	1120746.CCNL01000014_gene2099	NA	NA
UHGV-0107460_39	Pfam	PF20536	NA	DUF6751
UHGV-0107460_39	Structural annotation	PF20536, COG5437	NA	NA
UHGV-0107460_40	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0107460_40	eggNOG-mapper	545697.HMPREF0216_02851	NA	NA
UHGV-0107460_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0107460_41	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-0107460_41	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-0107460_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0107460_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0107460_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0107460_41	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0107460_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0107460_42	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-0107460_43	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0107460_43	UniRef90	UniRef90_UPI0006C77A91	phage minor capsid protein	NA
UHGV-0107460_43	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0107460_43	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0107460_43	COG	COG2369	NA	NA
UHGV-0107460_43	Structural annotation	PF06152	NA	NA
UHGV-0107460_44	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107460_44	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-0107460_44	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-0107460_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0107460_44	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0107460_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107460_45	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0107460_45	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-0107460_45	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0107460_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0107460_45	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0107460_45	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0107460_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107460_45	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107460_48	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0107460_48	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0107460_48	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0107460_48	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0107460_50	PHROG	phrog_3886	NA	unknown function
UHGV-0107460_50	eggNOG-mapper	742735.HMPREF9467_00880	NA	NA
UHGV-0107460_51	KOfam	K03744	lemA; LemA protein	NA
UHGV-0107460_51	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0107460_51	UniRef90	UniRef90_A0A417TP98	LemA family protein	NA
UHGV-0107460_51	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-0107460_51	Pfam	PF04011	LemA family	LemA
UHGV-0107460_51	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0107460_51	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0107460_52	PHROG	phrog_25385	NA	unknown function
UHGV-0107460_52	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0107460_54	PHROG	phrog_7839	NA	unknown function
UHGV-0107460_54	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0107460_54	Structural annotation	PF08860	NA	NA
UHGV-0107460_55	PHROG	phrog_774	NA	unknown function
UHGV-0107460_55	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-0107460_55	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0107460_56	PHROG	phrog_23773	NA	unknown function
UHGV-0107460_56	eggNOG-mapper	484770.UFO1_3918	UMP catabolic process	NA
UHGV-0107460_56	COG	COG0647	Ribonucleotide monophosphatase NagD, HAD superfamily	NA
UHGV-0107460_56	Structural annotation	PF08645, TIGR01689, COG0241	NA	NA
UHGV-0107460_58	PHROG	phrog_419	NA	unknown function
UHGV-0107460_58	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-0107460_58	Structural annotation	PF14083	NA	NA
UHGV-0107460_60	PHROG	phrog_474	phosphofructokinase	other
UHGV-0107460_60	UniRef90	UniRef90_A0A2V2FHD6	NA	NA
UHGV-0107460_60	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0107460_60	Pfam	PF19905	NA	DUF6378
UHGV-0107460_60	Structural annotation	PF19905	NA	NA
UHGV-0107460_61	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0107460_61	UniRef90	UniRef90_A0A3A9EQ73	Restriction alleviation protein, Lar family	NA
UHGV-0107460_61	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0107460_61	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0107460_61	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0107460_62	PHROG	phrog_22543	NA	unknown function
UHGV-0107460_63	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0107460_63	UniRef90	UniRef90_A0A845MWR1	Restriction alleviation protein, Lar family	NA
UHGV-0107460_63	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0107460_63	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0107460_63	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0107460_64	PHROG	phrog_22543	NA	unknown function
UHGV-0107460_64	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0107460_65	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107460_65	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0107460_65	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0107460_65	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107460_65	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0107460_65	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0107460_68	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0107460_68	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0107460_68	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0107460_68	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0107460_68	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0107460_68	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0107460_68	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0107460_69	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0107460_69	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107460_69	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0107460_69	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0107460_69	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0107460_69	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0107460_70	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107460_70	UniRef90	UniRef90_A0A6L5TYD7	DnaD domain protein	NA
UHGV-0107460_70	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0107460_70	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107460_70	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0107460_71	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0107460_71	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107460_71	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0107460_71	eggNOG-mapper	1203606.HMPREF1526_02270	Single-stranded DNA-binding protein	NA
UHGV-0107460_71	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0107460_71	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0107460_71	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107460_71	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0107460_71	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0107460_72	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107460_72	UniRef90	UniRef90_A0A417H726	HNH endonuclease	NA
UHGV-0107460_72	eggNOG-mapper	521000.PROVRETT_05968	HNH endonuclease	NA
UHGV-0107460_72	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-0107460_72	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0107460_72	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-0107460_73	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0107460_73	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107460_73	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0107460_73	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0107460_73	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107460_74	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0107460_74	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0107460_74	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0107460_74	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0107460_75	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107460_75	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0107460_78	PHROG	phrog_27197	NA	unknown function
UHGV-0107460_78	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0107460_78	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0107460_78	Structural annotation	NF007410	NA	NA