UHGV-0107642

Genome information

Genome length 18,698 bps

CDS count 21

Completeness 61.21% (medium-quality)

geNomad score 0.9663

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107642
vOTU ID	vOTU-041891
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250004
BioSample	SAMEA3708769
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	61.21% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9663
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.1
Jumbo phage	No

Genome content
Genome length	18,698 bps
GC content	52.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	21
CDS density	92.26%
Average CDS length	821.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107642_3	PHROG	phrog_4898	holin	lysis
UHGV-0107642_3	UniRef90	UniRef90_A0A843HL60	YvrJ family protein	NA
UHGV-0107642_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0107642_4	PHROG	phrog_2338	endolysin	lysis
UHGV-0107642_4	UniRef90	UniRef90_UPI0009339BF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107642_4	eggNOG-mapper	35760.BCHO_0821	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107642_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0107642_4	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0107642_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0107642_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0107642_5	Structural annotation	PF17548, MF_00273, NF001981, COG2157	NA	NA
UHGV-0107642_6	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107642_6	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0107642_6	Structural annotation	PF17427	NA	NA
UHGV-0107642_8	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0107642_8	Structural annotation	PF03175, MF_04055, NF004419, COG0417	NA	NA
UHGV-0107642_9	PHROG	phrog_2150	terminase	head and packaging
UHGV-0107642_9	UniRef90	UniRef90_A0A843GXZ6	Phage DNA encapsidation protein	NA
UHGV-0107642_9	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0107642_9	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0107642_9	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107642_11	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0107642_11	UniRef90	UniRef90_A0A3G3LXZ7	Major capsid protein	NA
UHGV-0107642_11	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0107642_11	Structural annotation	PF21703, PF20942, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0107642_12	PHROG	phrog_2248	tail protein	tail
UHGV-0107642_12	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0107642_12	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0107642_14	PHROG	phrog_2038	upper collar connector	connector
UHGV-0107642_14	UniRef90	UniRef90_A0A345BNP3	Upper collar protein	NA
UHGV-0107642_14	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0107642_14	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0107642_14	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0107642_20	UniRef90	UniRef90_A0A1X0TFB1	KAP NTPase domain-containing protein (Fragment)	NA
UHGV-0107642_20	eggNOG-mapper	411468.CLOSCI_03296	NA	NA
UHGV-0107642_20	PADLOC	Tmn_00001	NA	tmn
UHGV-0107642_20	Pfam	PF20693	YobI-like P-loop NTPase	YobI-ATPase
UHGV-0107642_21	eggNOG-mapper	610130.Closa_3992	NA	NA