UHGV-0107691

Genome information

Genome length 41,608 bps

CDS count 63

Completeness 87.60% (medium-quality)

geNomad score 0.9748

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107691
vOTU ID	vOTU-015489
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_254799
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9748
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.48
Jumbo phage	No

Genome content
Genome length	41,608 bps
GC content	40.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.39%
Average CDS length	622.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107691_2	PHROG	phrog_376	tail protein	tail
UHGV-0107691_2	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0107691_2	eggNOG-mapper	568816.Acin_1828	NA	NA
UHGV-0107691_2	Structural annotation	PF11134, PF13157, MF_03037, TIGR02658, COG4257	NA	NA
UHGV-0107691_4	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0107691_6	PHROG	phrog_13589	NA	unknown function
UHGV-0107691_6	eggNOG-mapper	632245.CLP_1288	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0107691_6	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0107691_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0107691_7	PHROG	phrog_6465	tail protein	tail
UHGV-0107691_7	UniRef90	UniRef90_A0A2K8XI57	Phage tail protein	NA
UHGV-0107691_7	eggNOG-mapper	1042156.CXIVA_07170	tail collar domain protein	NA
UHGV-0107691_7	COG	COG4675	Phage tail collar domain	NA
UHGV-0107691_7	Structural annotation	COG4675	NA	NA
UHGV-0107691_8	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0107691_8	UniRef90	UniRef90_A0A553KI40	NA	NA
UHGV-0107691_8	eggNOG-mapper	1232428.CAVO010000067_gene418	NA	NA
UHGV-0107691_10	eggNOG-mapper	568816.Acin_1216	NA	NA
UHGV-0107691_11	PHROG	phrog_5867	endolysin	lysis
UHGV-0107691_11	UniRef90	UniRef90_A0A7X2XH64	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107691_11	eggNOG-mapper	1262914.BN533_02021	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107691_11	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0107691_11	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0107691_11	Structural annotation	MF_04111	NA	NA
UHGV-0107691_14	UniRef90	UniRef90_A0A412X6W3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0107691_14	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0107691_14	Structural annotation	PF08281, MF_00245, NF001075, COG2739	NA	NA
UHGV-0107691_16	PHROG	phrog_9880	NA	unknown function
UHGV-0107691_16	UniRef90	UniRef90_A0A412X674	MuF_C domain-containing protein	NA
UHGV-0107691_16	eggNOG-mapper	1123288.SOV_1c10750	NA	NA
UHGV-0107691_16	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0107691_19	PHROG	phrog_16490	NA	unknown function
UHGV-0107691_19	eggNOG-mapper	476272.RUMHYD_01954	NA	NA
UHGV-0107691_20	eggNOG-mapper	397290.C810_01330	NA	NA
UHGV-0107691_21	UniRef90	UniRef90_A0A7M1RS47	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0107691_21	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0107691_22	KOfam	K14059	int; integrase	NA
UHGV-0107691_22	PHROG	phrog_1	integrase	integration and excision
UHGV-0107691_22	UniRef90	UniRef90_A0A412X637	Site-specific integrase (Fragment)	NA
UHGV-0107691_22	eggNOG-mapper	1232428.CAVO010000003_gene1025	Belongs to the 'phage' integrase family	NA
UHGV-0107691_22	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0107691_22	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0107691_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107691_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0107691_22	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0107691_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107691_24	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0107691_24	UniRef90	UniRef90_A0A7X2XHP2	Helix-turn-helix domain-containing protein	NA
UHGV-0107691_24	eggNOG-mapper	1256908.HMPREF0373_00643	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0107691_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107691_24	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0107691_24	Structural annotation	PF08667, MF_00535, NF041951, COG1396	NA	NA
UHGV-0107691_25	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0107691_25	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0107691_25	UniRef90	UniRef90_A0A7X3BWJ6	Helix-turn-helix domain-containing protein	NA
UHGV-0107691_25	eggNOG-mapper	521003.COLINT_02107	PFAM helix-turn-helix domain protein	NA
UHGV-0107691_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107691_25	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107691_25	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0107691_34	PHROG	phrog_14970	NA	unknown function
UHGV-0107691_34	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0107691_34	eggNOG-mapper	272562.CA_C1936	double-strand break repair protein	NA
UHGV-0107691_34	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0107691_34	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0107691_34	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0107691_35	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0107691_35	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0107691_35	eggNOG-mapper	508419.F8J186_9CAUD	NA	NA
UHGV-0107691_36	UniRef90	UniRef90_A0A8B2QNX6	HNH domain-containing protein	NA
UHGV-0107691_36	eggNOG-mapper	1462526.BN990_01827	HNH nucleases	NA
UHGV-0107691_36	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107691_36	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0107691_37	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107691_37	UniRef90	UniRef90_UPI001072EADE	DNA replication protein DnaD	NA
UHGV-0107691_37	eggNOG-mapper	1443125.Z962_05745	DnaD domain protein	NA
UHGV-0107691_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107691_37	Structural annotation	TIGR01610	NA	NA
UHGV-0107691_39	PHROG	phrog_5070	NA	unknown function
UHGV-0107691_39	UniRef90	UniRef90_UPI00103291C8	polymer-forming cytoskeletal protein	NA
UHGV-0107691_39	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0107691_39	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0107691_41	PHROG	phrog_1008	DNA methyltransferase	other
UHGV-0107691_41	UniRef90	UniRef90_E6X1S7	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0107691_41	eggNOG-mapper	521098.Aaci_0567	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0107691_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0107691_43	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107691_43	UniRef90	UniRef90_UPI000F0C6FA4	NA	NA
UHGV-0107691_43	eggNOG-mapper	1347392.CCEZ01000043_gene417	NA	NA
UHGV-0107691_43	Pfam	PF06356	NA	DUF1064
UHGV-0107691_43	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0107691_44	PHROG	phrog_8538	NA	unknown function
UHGV-0107691_44	eggNOG-mapper	1009370.ALO_12631	NA	NA
UHGV-0107691_46	KOfam	K19779	ralR; endodeoxyribonuclease RalR [EC:3.1.-.-]	NA
UHGV-0107691_46	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0107691_46	UniRef90	UniRef90_A0A7X2XHM6	Restriction alleviation protein, Lar family	NA
UHGV-0107691_46	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0107691_46	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0107691_46	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0107691_46	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0107691_48	UniRef90	UniRef90_A0A412X6I8	Zinc ribbon domain-containing protein	NA
UHGV-0107691_48	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0107691_50	Structural annotation	PF18337	NA	NA
UHGV-0107691_51	eggNOG-mapper	401526.TcarDRAFT_1279	phage transcriptional regulator, RinA family	NA
UHGV-0107691_51	Structural annotation	PF05263, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0107691_54	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0107691_54	UniRef90	UniRef90_A0A843HSC6	DNA-packaging protein	NA
UHGV-0107691_54	eggNOG-mapper	935837.JAEK01000054_gene1463	DNA-packaging protein gp3	NA
UHGV-0107691_54	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0107691_54	Structural annotation	PF16677	NA	NA
UHGV-0107691_55	PHROG	phrog_5902	NA	unknown function
UHGV-0107691_55	UniRef90	UniRef90_UPI001032D579	terminase	NA
UHGV-0107691_55	eggNOG-mapper	1485543.JMME01000020_gene792	Terminase RNaseH-like domain	NA
UHGV-0107691_55	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0107691_55	Structural annotation	PF03237, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107691_57	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0107691_57	UniRef90	UniRef90_UPI0010329B07	portal protein	NA
UHGV-0107691_57	eggNOG-mapper	699218.HMPREF0889_0287	Bacteriophage head to tail connecting protein	NA
UHGV-0107691_57	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0107691_57	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0107691_58	PHROG	phrog_528	NA	unknown function
UHGV-0107691_58	eggNOG-mapper	568816.Acin_1833	NA	NA
UHGV-0107691_60	PHROG	phrog_212	major head protein	head and packaging
UHGV-0107691_60	UniRef90	UniRef90_Q775C7	Bbp17	NA
UHGV-0107691_60	eggNOG-mapper	360910.BAV0425	NA	NA
UHGV-0107691_60	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0107691_60	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0107691_63	PHROG	phrog_394	tail protein	tail
UHGV-0107691_63	eggNOG-mapper	469610.HMPREF0189_01113	NA	NA