UHGV-0107742

Genome information

Genome length 14,309 bps

CDS count 24

Completeness 98.63% (high-quality)

geNomad score 0.9592

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107742
vOTU ID	vOTU-059779
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_264509
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.63% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	3
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9592
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	18.26
Jumbo phage	No

Genome content
Genome length	14,309 bps
GC content	51.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	88.31%
Average CDS length	532.13 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107742_1	KOfam	K14059	int; integrase	NA
UHGV-0107742_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0107742_1	UniRef90	UniRef90_UPI001C02FB7B	site-specific integrase	NA
UHGV-0107742_1	eggNOG-mapper	877411.JMMA01000002_gene2540	Belongs to the 'phage' integrase family	NA
UHGV-0107742_1	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0107742_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107742_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0107742_1	Structural annotation	PF00589, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0107742_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107742_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107742_2	UniRef90	UniRef90_UPI00195ECC2E	helix-turn-helix domain-containing protein	NA
UHGV-0107742_2	eggNOG-mapper	1123307.KB904415_gene672	Helix-turn-helix XRE-family like proteins	NA
UHGV-0107742_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107742_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107742_3	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0107742_3	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0107742_3	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0107742_4	PHROG	phrog_2113	NA	unknown function
UHGV-0107742_4	eggNOG-mapper	1160721.RBI_II00485	NA	NA
UHGV-0107742_4	Structural annotation	PF08279, COG1654	NA	NA
UHGV-0107742_5	PHROG	phrog_5708	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107742_5	UniRef90	UniRef90_A0A2K4QBX8	Phg_2220_C domain-containing protein	NA
UHGV-0107742_5	eggNOG-mapper	1203606.HMPREF1526_00313	DnaD domain protein	NA
UHGV-0107742_5	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107742_5	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0107742_6	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0107742_6	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0107742_6	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0107742_6	eggNOG-mapper	742738.HMPREF9460_00852	Participates in initiation and elongation during chromosome replication	NA
UHGV-0107742_6	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0107742_6	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0107742_6	COG	COG0305	Replicative DNA helicase	NA
UHGV-0107742_6	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0107742_9	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0107742_9	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0107742_9	UniRef90	UniRef90_UPI001F4290AF	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0107742_9	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0107742_9	Structural annotation	PF07638, MF_00959, NF006147, COG0568	NA	NA
UHGV-0107742_10	UniRef90	UniRef90_A0A412AWV1	Helix-turn-helix domain-containing protein	NA
UHGV-0107742_11	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107742_11	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0107742_11	UniRef90	UniRef90_A0A6N7TQ80	PBSX family phage terminase large subunit	NA
UHGV-0107742_11	eggNOG-mapper	397291.C804_01612	Phage terminase large subunit	NA
UHGV-0107742_11	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0107742_11	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0107742_11	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0107742_11	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107742_11	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107742_12	PHROG	phrog_15404	NA	unknown function
UHGV-0107742_12	eggNOG-mapper	397291.C804_01613	NA	NA
UHGV-0107742_17	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0107742_17	UniRef90	UniRef90_A0A4U7JDN1	Phage tail tape measure protein	NA
UHGV-0107742_17	eggNOG-mapper	1449343.JQLQ01000002_gene1324	Phage tail tape measure protein	NA
UHGV-0107742_17	COG	COG5412	Phage-related protein	NA
UHGV-0107742_17	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0107742_19	Structural annotation	NF041070	NA	NA
UHGV-0107742_22	PHROG	phrog_13890	NA	unknown function
UHGV-0107742_23	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0107742_23	UniRef90	UniRef90_G7WI43	Abi-like protein	NA
UHGV-0107742_23	eggNOG-mapper	768706.Desor_5594	Abi-like protein	NA
UHGV-0107742_23	PADLOC	AbiD	AbiD	Abi
UHGV-0107742_23	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0107742_23	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0107742_23	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0107742_24	eggNOG-mapper	1235797.C816_02265	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0107742_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA