UHGV-0107747

Genome information

Genome length 42,921 bps

CDS count 65

Completeness 75.67% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107747
vOTU ID	vOTU-042413
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_236310
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	75.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.82
Jumbo phage	No

Genome content
Genome length	42,921 bps
GC content	47.66%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	88.24%
Average CDS length	592.11 bps
tRNA count	1
Suppressor tRNA genes	1

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107747_2	UniRef90	UniRef90_A0A096B066	Mtd_N domain-containing protein	NA
UHGV-0107747_3	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0107747_3	Structural annotation	PF00354	NA	NA
UHGV-0107747_5	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0107747_6	PHROG	phrog_32322	NA	unknown function
UHGV-0107747_6	UniRef90	UniRef90_A0A1Y3SHI6	Ig-like_bact domain-containing protein	NA
UHGV-0107747_6	eggNOG-mapper	1232446.BAIE02000011_gene1581	NA	NA
UHGV-0107747_6	Pfam	PF13754	NA	Big_3_4
UHGV-0107747_6	Structural annotation	PF13754	NA	NA
UHGV-0107747_7	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0107747_7	PHROG	phrog_11157	NA	unknown function
UHGV-0107747_7	UniRef90	UniRef90_A0A1M5CXW0	Big_13 domain-containing protein	NA
UHGV-0107747_7	eggNOG-mapper	742765.HMPREF9457_03368	NA	NA
UHGV-0107747_7	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0107747_7	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0107747_7	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0107747_7	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0107747_8	PHROG	phrog_13879	NA	unknown function
UHGV-0107747_8	eggNOG-mapper	645991.Sgly_0356	NA	NA
UHGV-0107747_8	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0107747_9	PHROG	phrog_1194	NA	unknown function
UHGV-0107747_9	eggNOG-mapper	1449343.JQLQ01000002_gene1510	NA	NA
UHGV-0107747_9	Pfam	PF20458	NA	DUF6711
UHGV-0107747_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0107747_10	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0107747_10	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0107747_10	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0107747_13	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0107747_13	UniRef90	UniRef90_UPI00189AB719	Rha family transcriptional regulator	NA
UHGV-0107747_13	eggNOG-mapper	1196028.ALEF01000043_gene494	ORF6C domain	NA
UHGV-0107747_13	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0107747_13	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0107747_13	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0107747_13	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0107747_16	UniRef90	UniRef90_A0A3P3UAK8	CopG family transcriptional regulator	NA
UHGV-0107747_16	eggNOG-mapper	445971.ANASTE_00663	Ribbon-helix-helix protein, copG family	NA
UHGV-0107747_16	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0107747_18	UniRef90	UniRef90_UPI0002DB73A7	NA	NA
UHGV-0107747_18	eggNOG-mapper	986075.CathTA2_1209	serine threonine protein kinase	NA
UHGV-0107747_18	AcrCatalog	cluster_71895	NA	NA
UHGV-0107747_18	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0107747_18	Structural annotation	PF11611, PF03843, MF_00791, MF_01959, TIGR03943, NF003465, COG3065, COG2967	NA	NA
UHGV-0107747_19	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0107747_19	UniRef90	UniRef90_A0A1V0QCE9	Bro-N domain-containing protein	NA
UHGV-0107747_19	eggNOG-mapper	1415774.U728_781	Phage antirepressor protein KilAC domain	NA
UHGV-0107747_19	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0107747_19	COG	COG3617	Prophage antirepressor	NA
UHGV-0107747_19	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0107747_20	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0107747_21	UniRef90	UniRef90_A0A845R9E6	NA	NA
UHGV-0107747_21	Pfam	PF16478	NA	DUF5055
UHGV-0107747_21	Structural annotation	PF16478	NA	NA
UHGV-0107747_22	PHROG	phrog_158	major tail protein	tail
UHGV-0107747_22	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0107747_22	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0107747_23	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0107747_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0107747_24	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0107747_24	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0107747_24	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0107747_25	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0107747_25	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0107747_26	UniRef90	UniRef90_A0A845R6M6	DNA-packaging protein	NA
UHGV-0107747_26	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0107747_26	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0107747_26	Structural annotation	TIGR01560	NA	NA
UHGV-0107747_28	eggNOG-mapper	1226322.HMPREF1545_00051	NA	NA
UHGV-0107747_29	PHROG	phrog_29	major head protein	head and packaging
UHGV-0107747_29	UniRef90	UniRef90_A0A7X5DZ98	Phage capsid protein	NA
UHGV-0107747_29	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0107747_29	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0107747_29	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0107747_30	PHROG	phrog_909	major head protein	head and packaging
UHGV-0107747_30	eggNOG-mapper	1298920.KI911353_gene2661	NA	NA
UHGV-0107747_32	PHROG	phrog_6072	NA	unknown function
UHGV-0107747_33	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0107747_33	UniRef90	UniRef90_A0A1C5WCC8	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0107747_33	COG	COG2369	NA	NA
UHGV-0107747_34	PHROG	phrog_23707	NA	unknown function
UHGV-0107747_34	UniRef90	UniRef90_A0A1Q6KU34	NA	NA
UHGV-0107747_34	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0107747_34	Structural annotation	PF08325, COG4900	NA	NA
UHGV-0107747_35	PHROG	phrog_64	portal protein	head and packaging
UHGV-0107747_35	UniRef90	UniRef90_A0A845RCM8	Phage portal protein	NA
UHGV-0107747_35	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0107747_35	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0107747_35	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0107747_36	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0107747_36	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0107747_36	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0107747_36	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0107747_36	COG	COG5410	NA	NA
UHGV-0107747_36	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0107747_37	Pfam	PF04448	NA	DUF551
UHGV-0107747_38	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107747_38	UniRef90	UniRef90_UPI0006806A38	AP2 domain-containing protein	NA
UHGV-0107747_38	eggNOG-mapper	411467.BACCAP_02633	NA	NA
UHGV-0107747_38	Structural annotation	PF17375	NA	NA
UHGV-0107747_39	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107747_39	UniRef90	UniRef90_C9KJA8	dUTP diphosphatase	NA
UHGV-0107747_39	eggNOG-mapper	500635.MITSMUL_03105	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0107747_39	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0107747_40	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0107747_40	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0107747_40	UniRef90	UniRef90_A0A810Q558	DNA recombinase	NA
UHGV-0107747_40	eggNOG-mapper	398512.JQKC01000007_gene1081	NA	NA
UHGV-0107747_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0107747_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0107747_40	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0107747_44	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0107747_44	eggNOG-mapper	1235793.C809_00539	NA	NA
UHGV-0107747_44	Structural annotation	PF16677	NA	NA
UHGV-0107747_48	PHROG	phrog_1485	NA	unknown function
UHGV-0107747_48	UniRef90	UniRef90_UPI001C127ADA	nucleotide modification associated domain-containing protein	NA
UHGV-0107747_48	eggNOG-mapper	1415774.U728_1099	NA	NA
UHGV-0107747_48	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0107747_48	Structural annotation	PF18909	NA	NA
UHGV-0107747_51	PHROG	phrog_22543	NA	unknown function
UHGV-0107747_53	PHROG	phrog_38832	NA	unknown function
UHGV-0107747_53	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0107747_54	PHROG	phrog_37865	NA	unknown function
UHGV-0107747_55	UniRef90	UniRef90_A0A372SX62	Zinc ribbon domain-containing protein	NA
UHGV-0107747_57	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0107747_57	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0107747_58	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0107747_58	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0107747_58	UniRef90	UniRef90_A0A316S792	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0107747_58	eggNOG-mapper	1216932.CM240_0666	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0107747_58	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0107747_58	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0107747_58	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0107747_58	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0107747_58	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0107747_62	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0107747_62	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107747_62	UniRef90	UniRef90_A0A2Z4WAX1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0107747_62	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0107747_62	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0107747_62	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0107747_62	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0107747_64	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0107747_64	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0107747_64	UniRef90	UniRef90_A0A1C5N602	DNA repair protein RadA	NA
UHGV-0107747_64	eggNOG-mapper	1378168.N510_01441	NA	NA
UHGV-0107747_64	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0107747_64	COG	COG0305	Replicative DNA helicase	NA
UHGV-0107747_64	Structural annotation	PF03796, MF_04154, NF006606, COG0467	NA	NA