UHGV-0107768

Genome information

Genome length 29,967 bps

CDS count 51

Completeness 86.02% (medium-quality)

geNomad score 0.9816

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107768
vOTU ID	vOTU-018472
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_241591
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	86.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9816
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.65
Jumbo phage	No

Genome content
Genome length	29,967 bps
GC content	57.22%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	95.04%
Average CDS length	562.65 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107768_1	PHROG	phrog_199	holin	lysis
UHGV-0107768_1	UniRef90	UniRef90_R5AT18	Toxin secretion/phage lysis holin	NA
UHGV-0107768_1	eggNOG-mapper	742738.HMPREF9460_01388	Bacteriophage holin family	NA
UHGV-0107768_1	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0107768_1	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0107768_1	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0107768_1	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0107768_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0107768_2	PHROG	phrog_5182	endolysin	lysis
UHGV-0107768_2	UniRef90	UniRef90_R5AZE6	N-acetylmuramoyl-L-alanine amidase family 2	NA
UHGV-0107768_2	eggNOG-mapper	397288.C806_00777	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0107768_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0107768_2	Pfam	PF00395	S-layer homology domain	SLH
UHGV-0107768_2	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107768_2	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0107768_3	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0107768_3	Structural annotation	PF18998, PF20328	NA	NA
UHGV-0107768_5	UniRef90	UniRef90_A0A7X4ZPD3	Histidine kinase	NA
UHGV-0107768_5	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0107768_6	PHROG	phrog_13589	NA	unknown function
UHGV-0107768_6	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0107768_7	PHROG	phrog_31538	NA	unknown function
UHGV-0107768_8	PHROG	phrog_15594	NA	unknown function
UHGV-0107768_8	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-0107768_8	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0107768_9	PHROG	phrog_24267	NA	unknown function
UHGV-0107768_9	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0107768_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0107768_9	Structural annotation	COG4675	NA	NA
UHGV-0107768_10	PHROG	phrog_38190	NA	unknown function
UHGV-0107768_10	eggNOG-mapper	762211.BSTEL_0610	NA	NA
UHGV-0107768_11	PHROG	phrog_6616	tail protein	tail
UHGV-0107768_11	Structural annotation	PF13550, PF16466, NF033848, COG3500	NA	NA
UHGV-0107768_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0107768_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0107768_13	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0107768_13	eggNOG-mapper	1449050.JNLE01000003_gene3881	domain protein	NA
UHGV-0107768_13	COG	COG1511	NA	NA
UHGV-0107768_13	Structural annotation	PF16789, TIGR02473	NA	NA
UHGV-0107768_14	PHROG	phrog_706	NA	unknown function
UHGV-0107768_14	UniRef90	UniRef90_UPI00164D7633	Gp15 family bacteriophage protein	NA
UHGV-0107768_14	eggNOG-mapper	693746.OBV_18170	Bacteriophage Gp15 protein	NA
UHGV-0107768_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0107768_14	Structural annotation	PF06854	NA	NA
UHGV-0107768_15	PHROG	phrog_11299	NA	unknown function
UHGV-0107768_15	eggNOG-mapper	1449050.JNLE01000003_gene3883	NA	NA
UHGV-0107768_15	Structural annotation	PF10666	NA	NA
UHGV-0107768_16	PHROG	phrog_3099	NA	unknown function
UHGV-0107768_16	eggNOG-mapper	693746.OBV_18150	NA	NA
UHGV-0107768_16	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0107768_17	PHROG	phrog_3266	tail completion	connector
UHGV-0107768_17	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0107768_17	Structural annotation	PF12691	NA	NA
UHGV-0107768_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0107768_18	UniRef90	UniRef90_A0A1H7MNM8	Minor capsid protein	NA
UHGV-0107768_18	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0107768_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0107768_18	Structural annotation	PF11114	NA	NA
UHGV-0107768_19	PHROG	phrog_3366	NA	unknown function
UHGV-0107768_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0107768_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0107768_20	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0107768_21	PHROG	phrog_267	major head protein	head and packaging
UHGV-0107768_21	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-0107768_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0107768_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0107768_22	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0107768_22	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0107768_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0107768_22	Structural annotation	PF06810	NA	NA
UHGV-0107768_23	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0107768_23	UniRef90	UniRef90_A0A355KVT5	Phage capsid protein (Fragment)	NA
UHGV-0107768_23	eggNOG-mapper	476272.RUMHYD_01761	Phage minor capsid protein 2	NA
UHGV-0107768_23	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0107768_23	COG	COG2369	NA	NA
UHGV-0107768_23	Structural annotation	PF06152	NA	NA
UHGV-0107768_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107768_24	UniRef90	UniRef90_A0A173TY48	Phage portal protein, putative, A118 family	NA
UHGV-0107768_24	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0107768_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0107768_25	PHROG	phrog_1233	NA	unknown function
UHGV-0107768_25	eggNOG-mapper	1415774.U728_832	NA	NA
UHGV-0107768_25	Structural annotation	PF13058	NA	NA
UHGV-0107768_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107768_26	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0107768_26	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0107768_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0107768_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0107768_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0107768_26	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0107768_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0107768_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107768_26	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107768_27	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0107768_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0107768_29	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0107768_29	Pfam	PF07374	NA	DUF1492
UHGV-0107768_29	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0107768_31	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0107768_31	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0107768_31	eggNOG-mapper	293826.Amet_2596	NA	NA
UHGV-0107768_31	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0107768_32	PHROG	phrog_5781	NA	unknown function
UHGV-0107768_32	eggNOG-mapper	573061.Clocel_3558	NA	NA
UHGV-0107768_32	Pfam	PF14359	NA	DUF4406
UHGV-0107768_32	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0107768_32	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0107768_33	PHROG	phrog_1029	NA	unknown function
UHGV-0107768_33	eggNOG-mapper	1203606.HMPREF1526_01890	NA	NA
UHGV-0107768_33	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0107768_34	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0107768_34	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0107768_35	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0107768_35	eggNOG-mapper	1519439.JPJG01000059_gene1910	NA	NA
UHGV-0107768_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0107768_36	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0107768_36	UniRef90	UniRef90_A0A350THX9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0107768_36	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0107768_36	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0107768_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0107768_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0107768_36	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0107768_37	eggNOG-mapper	1232449.BAHV02000016_gene1829	NA	NA
UHGV-0107768_38	KOfam	K03700	recU; recombination protein U	NA
UHGV-0107768_38	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107768_38	UniRef90	UniRef90_A0A1H0W5Y9	Holliday junction resolvase RecU	NA
UHGV-0107768_38	eggNOG-mapper	1203606.HMPREF1526_01884	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0107768_38	Pfam	PF03838	Recombination protein U	RecU
UHGV-0107768_38	COG	COG3331	Penicillin-binding protein-related factor A, putative recombinase	NA
UHGV-0107768_38	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0107768_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0107768_39	eggNOG-mapper	411470.RUMGNA_02047	NA	NA
UHGV-0107768_39	Structural annotation	PF21578	NA	NA
UHGV-0107768_42	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0107768_42	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0107768_42	UniRef90	UniRef90_A0A841SSA0	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0107768_42	eggNOG-mapper	1120998.AUFC01000033_gene2303	TIGRFAM looped-hinge helix DNA binding domain, AbrB family	NA
UHGV-0107768_42	Pfam	PF04014	Antidote-toxin recognition MazE, bacterial antitoxin	MazE_antitoxin
UHGV-0107768_42	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0107768_42	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0107768_42	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0107768_44	PHROG	phrog_585	NA	unknown function
UHGV-0107768_44	Pfam	PF10711	NA	DUF2513
UHGV-0107768_45	PHROG	phrog_750	NA	unknown function
UHGV-0107768_45	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0107768_47	PHROG	phrog_3240	NA	unknown function
UHGV-0107768_47	eggNOG-mapper	320841.Q4ZC34_9CAUD	NA	NA
UHGV-0107768_49	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0107768_49	UniRef90	UniRef90_UPI0013ECC13D	helix-turn-helix domain-containing protein	NA
UHGV-0107768_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0107768_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107768_49	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107768_49	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0107768_50	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107768_50	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107768_50	UniRef90	UniRef90_UPI000E31F980	helix-turn-helix domain-containing protein	NA
UHGV-0107768_50	eggNOG-mapper	1125712.HMPREF1316_2394	Peptidase S24-like	NA
UHGV-0107768_50	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0107768_50	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107768_50	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0107768_50	Structural annotation	PF13560, MF_00535, NF007257, COG3655	NA	NA
UHGV-0107768_51	PHROG	phrog_1914	NA	unknown function
UHGV-0107768_51	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0107768_51	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0107768_51	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0107768_51	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA