UHGV-0107855

Genome information

Genome length 45,380 bps

CDS count 65

Completeness 100.00% (complete)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107855
vOTU ID	vOTU-005188
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255386
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	26.3
Jumbo phage	No

Genome content
Genome length	45,380 bps
GC content	53.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	90.35%
Average CDS length	633.83 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107855_1	KOfam	K19719	COL2A; collagen type II alpha	NA
UHGV-0107855_1	PHROG	phrog_819	tail protein	tail
UHGV-0107855_1	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0107855_2	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0107855_2	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0107855_2	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0107855_3	PHROG	phrog_13046	NA	unknown function
UHGV-0107855_3	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0107855_3	Structural annotation	PF20387	NA	NA
UHGV-0107855_4	PHROG	phrog_371	major head protein	head and packaging
UHGV-0107855_4	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0107855_4	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0107855_4	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0107855_4	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0107855_5	PHROG	phrog_24113	NA	unknown function
UHGV-0107855_5	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0107855_5	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0107855_6	PHROG	phrog_35275	NA	unknown function
UHGV-0107855_6	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0107855_9	PHROG	phrog_156	portal protein	head and packaging
UHGV-0107855_9	eggNOG-mapper	1519439.JPJG01000060_gene1886	NA	NA
UHGV-0107855_9	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0107855_10	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107855_10	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0107855_10	UniRef90	UniRef90_A0A417HVY4	PBSX family phage terminase large subunit	NA
UHGV-0107855_10	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-0107855_10	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0107855_10	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0107855_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107855_10	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107855_11	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0107855_11	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0107855_11	UniRef90	UniRef90_A0A2V2FED9	Terminase small subunit	NA
UHGV-0107855_11	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0107855_11	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0107855_11	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0107855_11	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0107855_12	Structural annotation	PF03869, NF010256	NA	NA
UHGV-0107855_16	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0107855_16	Pfam	PF18912	Double zinc ribbon domain	DZR_2
UHGV-0107855_19	PHROG	phrog_25385	NA	unknown function
UHGV-0107855_19	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0107855_20	PHROG	phrog_7839	NA	unknown function
UHGV-0107855_20	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0107855_20	Structural annotation	PF08860	NA	NA
UHGV-0107855_22	PHROG	phrog_419	NA	unknown function
UHGV-0107855_22	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0107855_22	eggNOG-mapper	1134413.ANNK01000120_gene2032	NA	NA
UHGV-0107855_22	Structural annotation	PF14083	NA	NA
UHGV-0107855_23	PHROG	phrog_474	phosphofructokinase	other
UHGV-0107855_23	UniRef90	UniRef90_A0A2V2FHD6	NA	NA
UHGV-0107855_23	eggNOG-mapper	1203606.HMPREF1526_00237	NA	NA
UHGV-0107855_23	Pfam	PF19905	NA	DUF6378
UHGV-0107855_23	Structural annotation	PF19905	NA	NA
UHGV-0107855_24	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0107855_24	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0107855_24	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0107855_24	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0107855_25	PHROG	phrog_22543	NA	unknown function
UHGV-0107855_25	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0107855_26	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107855_26	UniRef90	UniRef90_A0A417HX51	HNH endonuclease	NA
UHGV-0107855_26	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0107855_26	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107855_26	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0107855_26	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0107855_27	PHROG	phrog_3136	NA	unknown function
UHGV-0107855_27	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0107855_27	eggNOG-mapper	97139.C824_00742	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0107855_27	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0107855_27	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0107855_29	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0107855_29	PHROG	phrog_16427	DNA methyltransferase	other
UHGV-0107855_29	UniRef90	UniRef90_A0A6L5TDR3	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0107855_29	eggNOG-mapper	657322.FPR_26610	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0107855_29	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0107855_29	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0107855_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0107855_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0107855_30	UniRef90	UniRef90_A0A374UQL1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0107855_30	eggNOG-mapper	445972.ANACOL_03332	C-5 cytosine-specific DNA methylase	NA
UHGV-0107855_30	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0107855_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0107855_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0107855_31	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107855_31	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0107855_31	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0107855_31	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0107855_31	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0107855_32	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107855_32	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0107855_32	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0107855_32	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0107855_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0107855_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107855_33	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-0107855_33	eggNOG-mapper	1203606.HMPREF1526_01328	Single-stranded DNA-binding protein	NA
UHGV-0107855_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0107855_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0107855_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107855_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0107855_34	UniRef90	UniRef90_A0A845MWS0	Helix-turn-helix domain-containing protein	NA
UHGV-0107855_34	eggNOG-mapper	742738.HMPREF9460_02029	NA	NA
UHGV-0107855_34	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0107855_34	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0107855_35	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0107855_35	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107855_35	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0107855_35	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0107855_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107855_37	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0107855_37	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0107855_37	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0107855_37	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0107855_38	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107855_38	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0107855_41	PHROG	phrog_4433	NA	unknown function
UHGV-0107855_41	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-0107855_41	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0107855_42	PHROG	phrog_4433	NA	unknown function
UHGV-0107855_42	eggNOG-mapper	573061.Clocel_3578	regulation of DNA-templated transcription, elongation	NA
UHGV-0107855_42	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0107855_47	Structural annotation	COG3311	NA	NA
UHGV-0107855_48	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0107855_48	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0107855_48	UniRef90	UniRef90_A0A3A6CNZ7	XRE family transcriptional regulator	NA
UHGV-0107855_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107855_48	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107855_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0107855_49	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0107855_49	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0107855_49	UniRef90	UniRef90_A0A1B1I086	HTH cro/C1-type domain-containing protein	NA
UHGV-0107855_49	eggNOG-mapper	324057.Pjdr2_5181	Helix-turn-helix domain	NA
UHGV-0107855_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0107855_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107855_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0107855_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0107855_51	KOfam	K14059	int; integrase	NA
UHGV-0107855_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0107855_51	UniRef90	UniRef90_A0A417HS27	Site-specific integrase	NA
UHGV-0107855_51	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0107855_51	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0107855_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107855_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0107855_51	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0107855_52	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0107855_52	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0107855_52	UniRef90	UniRef90_A0A845MXW8	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0107855_52	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0107855_52	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0107855_52	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0107855_54	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0107855_55	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0107855_56	PHROG	phrog_16490	NA	unknown function
UHGV-0107855_56	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0107855_57	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-0107855_58	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0107855_60	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0107855_61	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0107855_61	PHROG	phrog_670	endolysin	lysis
UHGV-0107855_61	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0107855_61	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0107855_61	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0107855_61	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0107855_61	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0107855_62	PHROG	phrog_199	holin	lysis
UHGV-0107855_62	UniRef90	UniRef90_A0A3E2XXQ8	Holin	NA
UHGV-0107855_62	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-0107855_62	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0107855_62	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0107855_62	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0107855_62	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0107855_63	PHROG	phrog_1382	NA	unknown function
UHGV-0107855_63	eggNOG-mapper	33035.JPJF01000043_gene998	NA	NA
UHGV-0107855_65	Pfam	PF15859	Deleted in esophageal cancer 1 family	DEC1
UHGV-0107855_65	Pfam	PF12674	Putative zinc ribbon domain	Zn_ribbon_2