UHGV-0107871

Genome information

Genome length 19,428 bps

CDS count 29

Completeness 60.47% (medium-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107871
vOTU ID	vOTU-015954
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_235964
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	60.47% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	24.86
Jumbo phage	No

Genome content
Genome length	19,428 bps
GC content	37.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	29
CDS density	88.58%
Average CDS length	598.45 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107871_1	KOfam	K18904	nodT, ameC; outer membrane protein, multidrug efflux system	NA
UHGV-0107871_1	UniRef90	UniRef90_A0A7C5XTD9	TolC family protein	NA
UHGV-0107871_1	eggNOG-mapper	411476.BACOVA_02605	Efflux transporter, outer membrane factor lipoprotein, NodT family	NA
UHGV-0107871_1	Pfam	PF02321	Outer membrane efflux protein	OEP
UHGV-0107871_1	COG	COG1538	Outer membrane protein TolC	NA
UHGV-0107871_3	PHROG	phrog_2150	terminase	head and packaging
UHGV-0107871_3	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0107871_3	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0107871_3	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0107871_3	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107871_4	PHROG	phrog_199	holin	lysis
UHGV-0107871_4	UniRef90	UniRef90_A0A843HL15	Phage holin family protein	NA
UHGV-0107871_4	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-0107871_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0107871_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0107871_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0107871_5	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0107871_5	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0107871_5	UniRef90	UniRef90_A0A348SZW4	Peptidase_M23 domain-containing protein	NA
UHGV-0107871_5	eggNOG-mapper	293614.A1C_05580	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0107871_5	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0107871_5	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0107871_5	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0107871_9	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0107871_9	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0107871_9	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0107871_9	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0107871_10	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0107871_10	PHROG	phrog_14988	peptidase	other
UHGV-0107871_10	UniRef90	UniRef90_A0A4Q0U6L7	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0107871_10	eggNOG-mapper	1321778.HMPREF1982_01258	G5	NA
UHGV-0107871_10	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0107871_10	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0107871_10	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0107871_11	PHROG	phrog_2248	tail protein	tail
UHGV-0107871_11	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-0107871_11	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0107871_11	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0107871_11	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0107871_11	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0107871_12	PHROG	phrog_2038	upper collar connector	connector
UHGV-0107871_12	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0107871_12	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0107871_12	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0107871_13	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0107871_13	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0107871_16	Pfam	PF06715	Gp5 C-terminal repeat (3 copies)	Gp5_C
UHGV-0107871_16	Structural annotation	PF12708, TIGR04247, COG3420	NA	NA
UHGV-0107871_18	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0107871_18	UniRef90	UniRef90_UPI00056BF334	septation regulator SpoVG	NA
UHGV-0107871_18	eggNOG-mapper	1408304.JAHA01000008_gene1649	SpoVG	NA
UHGV-0107871_18	Pfam	PF04026	SpoVG	SpoVG
UHGV-0107871_18	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0107871_18	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0107871_20	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0107871_20	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0107871_25	Structural annotation	PF01503, MF_01019, NF001613, COG1694	NA	NA
UHGV-0107871_29	Structural annotation	PF17548	NA	NA