UHGV-0107874

Genome information

Genome length 39,509 bps

CDS count 60

Completeness 94.59% (high-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107874
vOTU ID	vOTU-071041
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_235960
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.59% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	73.5
Jumbo phage	No

Genome content
Genome length	39,509 bps
GC content	39.04%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	91.23%
Average CDS length	602.80 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107874_1	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0107874_1	PHROG	phrog_7	endolysin	lysis
UHGV-0107874_1	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0107874_1	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0107874_1	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0107874_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0107874_1	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0107874_1	HAMAP	MF_04110	Endolysin	NA
UHGV-0107874_1	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0107874_2	PHROG	phrog_443	holin	lysis
UHGV-0107874_2	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0107874_2	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0107874_2	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0107874_2	Structural annotation	PF16945	NA	NA
UHGV-0107874_3	PHROG	phrog_1863	NA	unknown function
UHGV-0107874_3	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0107874_4	PHROG	phrog_1220	head protein	head and packaging
UHGV-0107874_4	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0107874_5	PHROG	phrog_538	minor tail protein	tail
UHGV-0107874_5	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0107874_5	eggNOG-mapper	1121087.AUCK01000002_gene2497	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0107874_5	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0107874_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0107874_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0107874_6	UniRef90	UniRef90_A0A1I3HK03	Phage tail protein	NA
UHGV-0107874_6	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0107874_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0107874_6	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0107874_7	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0107874_7	UniRef90	UniRef90_A0A3D0EFB4	Phage tail protein (Fragment)	NA
UHGV-0107874_7	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0107874_7	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0107874_8	PHROG	phrog_706	NA	unknown function
UHGV-0107874_8	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0107874_8	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0107874_8	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0107874_8	Structural annotation	PF06854	NA	NA
UHGV-0107874_9	Structural annotation	PF20378	NA	NA
UHGV-0107874_10	PHROG	phrog_3099	NA	unknown function
UHGV-0107874_10	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0107874_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0107874_11	PHROG	phrog_3266	tail completion	connector
UHGV-0107874_11	Structural annotation	PF12691	NA	NA
UHGV-0107874_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0107874_12	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0107874_12	eggNOG-mapper	525255.HMPREF0077_0381	Minor capsid protein	NA
UHGV-0107874_12	Structural annotation	PF11114	NA	NA
UHGV-0107874_13	PHROG	phrog_3366	NA	unknown function
UHGV-0107874_13	Pfam	PF20536	NA	DUF6751
UHGV-0107874_13	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0107874_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0107874_15	PHROG	phrog_212	major head protein	head and packaging
UHGV-0107874_15	UniRef90	UniRef90_A0A412FGZ1	Phage capsid protein	NA
UHGV-0107874_15	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0107874_15	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0107874_16	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0107874_16	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0107874_16	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0107874_16	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0107874_16	Structural annotation	PF06810	NA	NA
UHGV-0107874_18	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0107874_18	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0107874_18	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0107874_18	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0107874_18	COG	COG2369	NA	NA
UHGV-0107874_18	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0107874_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107874_19	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0107874_19	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0107874_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0107874_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0107874_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0107874_20	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0107874_20	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0107874_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0107874_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107874_20	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0107874_21	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0107874_21	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0107874_21	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0107874_21	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0107874_21	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0107874_21	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0107874_21	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0107874_21	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0107874_22	eggNOG-mapper	483218.BACPEC_01222	NA	NA
UHGV-0107874_23	PHROG	phrog_23933	NA	unknown function
UHGV-0107874_23	UniRef90	UniRef90_R7JBB8	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	NA
UHGV-0107874_23	eggNOG-mapper	1415775.U729_2603	NA	NA
UHGV-0107874_23	Structural annotation	PF00211, NF033576, COG2114	NA	NA
UHGV-0107874_27	UniRef90	UniRef90_UPI00129E4C6A	NA	NA
UHGV-0107874_29	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0107874_29	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0107874_29	UniRef90	UniRef90_A0A3R5ZUS2	DNA adenine methylase	NA
UHGV-0107874_29	eggNOG-mapper	411468.CLOSCI_00302	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0107874_29	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0107874_29	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0107874_29	COG	COG0338	DNA-adenine methylase	NA
UHGV-0107874_29	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0107874_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0107874_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0107874_30	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0107874_30	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0107874_30	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0107874_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0107874_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0107874_30	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0107874_31	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0107874_31	UniRef90	UniRef90_A0A3R6K0Q5	Class I SAM-dependent methyltransferase	NA
UHGV-0107874_31	eggNOG-mapper	411461.DORFOR_01143	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0107874_31	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0107874_31	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0107874_31	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0107874_31	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0107874_32	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107874_32	UniRef90	UniRef90_UPI000E51D163	NA	NA
UHGV-0107874_32	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0107874_32	Pfam	PF13643	NA	DUF4145
UHGV-0107874_32	Structural annotation	PF13643	NA	NA
UHGV-0107874_33	PHROG	phrog_14088	NA	unknown function
UHGV-0107874_33	UniRef90	UniRef90_UPI000E4EAB4B	carboxypeptidase	NA
UHGV-0107874_33	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0107874_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0107874_34	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0107874_34	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0107874_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0107874_34	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0107874_36	PHROG	phrog_874	NA	unknown function
UHGV-0107874_36	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0107874_36	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0107874_36	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0107874_37	PHROG	phrog_20593	NA	unknown function
UHGV-0107874_38	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0107874_38	UniRef90	UniRef90_A0A412KFB8	Restriction alleviation protein, Lar family	NA
UHGV-0107874_38	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0107874_38	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0107874_38	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0107874_38	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0107874_39	eggNOG-mapper	97139.C824_00134	NA	NA
UHGV-0107874_40	PHROG	phrog_8684	NA	unknown function
UHGV-0107874_40	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0107874_40	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0107874_40	Pfam	PF09643	YopX protein	YopX
UHGV-0107874_40	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0107874_40	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0107874_41	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0107874_41	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0107874_45	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0107874_45	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107874_45	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0107874_45	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0107874_45	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0107874_45	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0107874_45	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0107874_46	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0107874_46	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0107874_46	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0107874_46	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0107874_47	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0107874_47	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0107874_47	UniRef90	UniRef90_A0A3R5X017	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0107874_47	eggNOG-mapper	796940.HMPREF9628_00163	Endodeoxyribonuclease RusA	NA
UHGV-0107874_47	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0107874_47	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0107874_47	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0107874_48	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0107874_48	UniRef90	UniRef90_A0A1Q6KI77	ORF6C domain-containing protein	NA
UHGV-0107874_48	eggNOG-mapper	428127.EUBDOL_01529	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0107874_48	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0107874_48	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0107874_48	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0107874_48	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0107874_48	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0107874_49	PHROG	phrog_398	NA	unknown function
UHGV-0107874_49	UniRef90	UniRef90_UPI001E5E0390	putative HNHc nuclease	NA
UHGV-0107874_49	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0107874_49	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0107874_49	Structural annotation	PF16784	NA	NA
UHGV-0107874_50	PHROG	phrog_14970	NA	unknown function
UHGV-0107874_50	eggNOG-mapper	1410632.JHWW01000001_gene1266	double-strand break repair protein	NA
UHGV-0107874_50	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0107874_50	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0107874_50	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0107874_52	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0107874_54	Structural annotation	PF11127	NA	NA
UHGV-0107874_55	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-0107874_55	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0107874_56	UniRef90	UniRef90_A0A3R5WA69	DNA-binding protein	NA
UHGV-0107874_56	eggNOG-mapper	1449050.JNLE01000005_gene3960	Helix-turn-helix domain	NA
UHGV-0107874_56	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0107874_56	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0107874_56	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0107874_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107874_57	UniRef90	UniRef90_A0A3R5ZDW3	XRE family transcriptional regulator	NA
UHGV-0107874_57	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0107874_57	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0107874_57	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0107874_57	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0107874_58	PHROG	phrog_87	metallo-protease	other
UHGV-0107874_58	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0107874_58	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0107874_58	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0107874_58	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0107874_58	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0107874_59	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0107874_59	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107874_59	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-0107874_59	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0107874_59	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0107874_59	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0107874_59	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0107874_60	KOfam	K14059	int; integrase	NA
UHGV-0107874_60	PHROG	phrog_1	integrase	integration and excision
UHGV-0107874_60	UniRef90	UniRef90_A0A6L6L8L1	Tyrosine-type recombinase/integrase	NA
UHGV-0107874_60	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0107874_60	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0107874_60	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107874_60	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0107874_60	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA