UHGV-0107930

Genome information

Genome length 12,501 bps

CDS count 17

Completeness 90.01% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107930
vOTU ID	vOTU-060100
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252772
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.01% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	4
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	16.39
Jumbo phage	No

Genome content
Genome length	12,501 bps
GC content	39.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	17
CDS density	94.06%
Average CDS length	694.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107930_4	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0107930_4	UniRef90	UniRef90_A0A843HEE1	DNA-directed DNA polymerase	NA
UHGV-0107930_4	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0107930_5	PHROG	phrog_11037	NA	unknown function
UHGV-0107930_5	UniRef90	UniRef90_A0A843GY68	Phage_lysozyme2 domain-containing protein	NA
UHGV-0107930_5	eggNOG-mapper	641107.CDLVIII_3773	heme binding	NA
UHGV-0107930_5	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0107930_5	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0107930_5	Structural annotation	PF18013	NA	NA
UHGV-0107930_8	PHROG	phrog_2150	terminase	head and packaging
UHGV-0107930_8	UniRef90	UniRef90_A0A843HQM3	Phage DNA encapsidation protein	NA
UHGV-0107930_8	eggNOG-mapper	1161906.I6P9K5_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0107930_8	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0107930_8	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107930_9	PHROG	phrog_31573	NA	unknown function
UHGV-0107930_9	UniRef90	UniRef90_E2NU61	SGNH_hydro domain-containing protein	NA
UHGV-0107930_9	Structural annotation	PF14606, PF01664, NF007819	NA	NA
UHGV-0107930_11	PHROG	phrog_2038	upper collar connector	connector
UHGV-0107930_11	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0107930_11	Structural annotation	PF05352, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0107930_12	Structural annotation	PF20934	NA	NA
UHGV-0107930_13	PHROG	phrog_14030	NA	unknown function
UHGV-0107930_13	UniRef90	UniRef90_F7V6X7	Cell wall-associated hydrolase	NA
UHGV-0107930_13	eggNOG-mapper	1042156.CXIVA_00320	NLP P60 protein	NA
UHGV-0107930_13	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0107930_13	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0107930_13	Structural annotation	PF05382, NF033742	NA	NA
UHGV-0107930_16	UniRef90	UniRef90_A0A843HBI5	Ig-like domain-containing protein	NA
UHGV-0107930_16	Structural annotation	PF21703, MF_04119, TIGR04387, COG4653	NA	NA