UHGV-0107939

Genome information

vOTU vOTU-022025

Genome length 15,758 bps

CDS count 22

Completeness 79.26% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107939
vOTU ID	vOTU-022025
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253378
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.31
Jumbo phage	No

Genome content
Genome length	15,758 bps
GC content	32.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	89.54%
Average CDS length	642.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107939_2	Structural annotation	PF17548	NA	NA
UHGV-0107939_6	Structural annotation	PF10925	NA	NA
UHGV-0107939_7	Structural annotation	PF17548	NA	NA
UHGV-0107939_8	Structural annotation	PF17427	NA	NA
UHGV-0107939_10	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0107939_10	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0107939_10	UniRef90	UniRef90_A0A843HUC7	DNA-directed DNA polymerase	NA
UHGV-0107939_10	eggNOG-mapper	10747.DPOL_BPCP1	nucleotide binding	NA
UHGV-0107939_10	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0107939_10	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0107939_11	Structural annotation	PF12021	NA	NA
UHGV-0107939_12	PHROG	phrog_2150	terminase	head and packaging
UHGV-0107939_12	UniRef90	UniRef90_A0A843GSD8	Phage DNA encapsidation protein	NA
UHGV-0107939_12	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0107939_12	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0107939_12	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0107939_14	PHROG	phrog_14030	NA	unknown function
UHGV-0107939_14	UniRef90	UniRef90_A0A2A7MEX2	Autolytic lysozyme	NA
UHGV-0107939_14	eggNOG-mapper	641107.CDLVIII_3774	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0107939_14	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0107939_14	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0107939_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0107939_14	Structural annotation	PF01471, COG3409	NA	NA
UHGV-0107939_15	PHROG	phrog_11037	NA	unknown function
UHGV-0107939_15	UniRef90	UniRef90_G7M3L1	Peptidoglycan-binding domain 1 protein	NA
UHGV-0107939_15	eggNOG-mapper	641107.CDLVIII_3773	heme binding	NA
UHGV-0107939_15	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0107939_15	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0107939_15	Structural annotation	PF18013	NA	NA
UHGV-0107939_17	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0107939_17	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-0107939_17	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0107939_17	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0107939_17	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0107939_18	PHROG	phrog_2248	tail protein	tail
UHGV-0107939_18	UniRef90	UniRef90_A0A843HUB8	Caud_tail_N domain-containing protein	NA
UHGV-0107939_18	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0107939_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0107939_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0107939_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0107939_19	PHROG	phrog_2038	upper collar connector	connector
UHGV-0107939_19	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0107939_19	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0107939_19	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0107939_19	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0107939_20	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0107939_20	UniRef90	UniRef90_A0A7T7ZAL4	Lower collar protein	NA
UHGV-0107939_20	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0107939_22	PHROG	phrog_31573	NA	unknown function
UHGV-0107939_22	UniRef90	UniRef90_UPI0018ABD2BC	SGNH/GDSL hydrolase family protein	NA
UHGV-0107939_22	eggNOG-mapper	1410622.JNKY01000013_gene1449	NA	NA
UHGV-0107939_22	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0107939_22	Structural annotation	PF14606, PF01664, NF007819, COG2845	NA	NA