UHGV-0107957

Genome information

Genome length 34,541 bps

CDS count 64

Completeness 95.64% (high-quality)

geNomad score 0.9617

Prediction confidence Confident

Genome information
Genome ID	UHGV-0107957
vOTU ID	vOTU-014550
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_254609
BioSample	SAMEA3708730
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.64% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9617
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.01
Jumbo phage	No

Genome content
Genome length	34,541 bps
GC content	27.72%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	64
CDS density	92.74%
Average CDS length	503.48 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0107957_1	KOfam	K01934	MTHFS; 5-formyltetrahydrofolate cyclo-ligase [EC:6.3.3.2]	NA
UHGV-0107957_1	UniRef90	UniRef90_R5YED9	5-formyltetrahydrofolate cyclo-ligase	NA
UHGV-0107957_1	eggNOG-mapper	1443122.Z958_06640	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family	NA
UHGV-0107957_1	Pfam	PF01812	5-formyltetrahydrofolate cyclo-ligase family	5-FTHF_cyc-lig
UHGV-0107957_1	NCBIFam	TIGR02727.1	5-formyltetrahydrofolate cyclo-ligase	NA
UHGV-0107957_1	COG	COG0212	5-formyltetrahydrofolate cyclo-ligase	NA
UHGV-0107957_2	KOfam	K14059	int; integrase	NA
UHGV-0107957_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0107957_2	UniRef90	UniRef90_R7IG47	Putative phage integrase	NA
UHGV-0107957_2	eggNOG-mapper	697284.ERIC2_c04490	Belongs to the 'phage' integrase family	NA
UHGV-0107957_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0107957_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0107957_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0107957_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0107957_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107957_4	UniRef90	UniRef90_A0A353JBB9	HTH cro/C1-type domain-containing protein	NA
UHGV-0107957_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107957_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107957_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0107957_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0107957_5	UniRef90	UniRef90_A0A198GIK6	HTH cro/C1-type domain-containing protein	NA
UHGV-0107957_5	eggNOG-mapper	1211844.CBLM010000083_gene1163	Helix-turn-helix XRE-family like proteins	NA
UHGV-0107957_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0107957_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0107957_5	Structural annotation	PF13560, NF041677, COG1396	NA	NA
UHGV-0107957_6	PHROG	phrog_989	NA	unknown function
UHGV-0107957_6	UniRef90	UniRef90_A0A0X1U6W0	ICEBs1 excisionase	NA
UHGV-0107957_8	PHROG	phrog_1163	NA	unknown function
UHGV-0107957_8	UniRef90	UniRef90_A0A0Q9XWV0	Replication protein	NA
UHGV-0107957_8	eggNOG-mapper	469604.HMPREF0946_00822	Transcriptional regulator	NA
UHGV-0107957_8	Pfam	PF19808	NA	DUF6291
UHGV-0107957_8	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0107957_8	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0107957_8	COG	COG1802	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0107957_9	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0107957_12	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0107957_12	UniRef90	UniRef90_UPI000F63F93F	ERF family protein	NA
UHGV-0107957_12	eggNOG-mapper	1415775.U729_2586	ERF superfamily	NA
UHGV-0107957_12	Pfam	PF04404	ERF superfamily	ERF
UHGV-0107957_12	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0107957_14	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0107957_14	UniRef90	UniRef90_UPI001CF8591D	YqaJ viral recombinase family protein	NA
UHGV-0107957_14	eggNOG-mapper	1122146.AUHP01000010_gene1042	YqaJ viral recombinase family	NA
UHGV-0107957_14	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0107957_14	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0107957_14	Structural annotation	PF10926, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0107957_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0107957_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0107957_15	UniRef90	UniRef90_A0A7X6SI00	Single-stranded DNA-binding protein	NA
UHGV-0107957_15	eggNOG-mapper	1385512.N784_08510	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0107957_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0107957_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0107957_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0107957_15	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0107957_15	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0107957_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0107957_16	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0107957_16	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0107957_19	PHROG	phrog_4601	NA	unknown function
UHGV-0107957_25	Pfam	PF04570	zinc-finger of the FCS-type, C2-C2	zf-FLZ
UHGV-0107957_35	Structural annotation	PF20384, COG1862	NA	NA
UHGV-0107957_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0107957_36	Structural annotation	PF15456	NA	NA
UHGV-0107957_38	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0107957_38	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0107957_38	UniRef90	UniRef90_A0A350H3S5	Terminase small subunit	NA
UHGV-0107957_38	eggNOG-mapper	445335.CBN_2993	Terminase small subunit	NA
UHGV-0107957_38	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0107957_38	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0107957_38	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0107957_39	UniRef90	UniRef90_R5A0K2	Putative phage terminase large subunit	NA
UHGV-0107957_39	eggNOG-mapper	645991.Sgly_0335	Phage terminase, large subunit, PBSX family	NA
UHGV-0107957_39	COG	COG1783	Phage terminase large subunit	NA
UHGV-0107957_39	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0107957_40	PHROG	phrog_533	portal protein	head and packaging
UHGV-0107957_40	UniRef90	UniRef90_R5A3Z5	Putative phage minor capsid protein	NA
UHGV-0107957_40	eggNOG-mapper	1117108.PAALTS15_13582	NA	NA
UHGV-0107957_40	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0107957_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0107957_42	UniRef90	UniRef90_R5A5Z0	Putative phage minor capsid protein	NA
UHGV-0107957_42	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0107957_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0107957_42	COG	COG2369	NA	NA
UHGV-0107957_42	Structural annotation	PF06152, PF03496, NF041404	NA	NA
UHGV-0107957_44	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0107957_44	Structural annotation	MF_02110	NA	NA
UHGV-0107957_45	PHROG	phrog_422	major head protein	head and packaging
UHGV-0107957_45	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0107957_45	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0107957_45	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0107957_48	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0107957_48	eggNOG-mapper	483218.BACPEC_01153	NA	NA
UHGV-0107957_49	PHROG	phrog_8710	NA	unknown function
UHGV-0107957_49	UniRef90	UniRef90_UPI0018A9BDCF	ParB/RepB/Spo0J family partition protein	NA
UHGV-0107957_49	eggNOG-mapper	1294142.CINTURNW_1032	NA	NA
UHGV-0107957_49	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0107957_50	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0107957_50	UniRef90	UniRef90_UPI00058FDD53	minor capsid protein	NA
UHGV-0107957_50	eggNOG-mapper	195103.CPF_0960	NA	NA
UHGV-0107957_51	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0107957_51	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-0107957_51	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-0107957_51	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0107957_51	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0107957_52	PHROG	phrog_820	major tail protein	tail
UHGV-0107957_52	UniRef90	UniRef90_R6DLA9	Conserved domain protein	NA
UHGV-0107957_52	eggNOG-mapper	658659.HMPREF0983_03301	NA	NA
UHGV-0107957_52	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0107957_53	PHROG	phrog_8300	NA	unknown function
UHGV-0107957_53	eggNOG-mapper	1507.HMPREF0262_00213	NA	NA
UHGV-0107957_53	Structural annotation	PF06854	NA	NA
UHGV-0107957_54	PHROG	phrog_8355	NA	unknown function
UHGV-0107957_54	UniRef90	UniRef90_UPI0011579C35	Gp15 family bacteriophage protein	NA
UHGV-0107957_54	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0107957_54	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0107957_55	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0107957_55	UniRef90	UniRef90_R5A122	ETS domain-containing protein	NA
UHGV-0107957_55	eggNOG-mapper	645991.Sgly_0352	SLT domain	NA
UHGV-0107957_55	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0107957_56	PHROG	phrog_1194	NA	unknown function
UHGV-0107957_56	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0107957_57	PHROG	phrog_6616	tail protein	tail
UHGV-0107957_57	eggNOG-mapper	658659.HMPREF0983_03295	NA	NA
UHGV-0107957_57	Structural annotation	PF16466, TIGR03361, COG3500	NA	NA
UHGV-0107957_58	PHROG	phrog_372	tail protein	tail
UHGV-0107957_58	eggNOG-mapper	1499683.CCFF01000017_gene2919	NA	NA
UHGV-0107957_58	Structural annotation	PF05895, MF_04116, MF_00791, NF010681, COG1361, COG4675	NA	NA
UHGV-0107957_59	PHROG	phrog_13632	NA	unknown function
UHGV-0107957_59	eggNOG-mapper	1399942.U3PIX4_9CAUD	NA	NA
UHGV-0107957_60	Structural annotation	PF17790, NF011770	NA	NA
UHGV-0107957_62	Structural annotation	PF07041	NA	NA
UHGV-0107957_63	Structural annotation	PF06946	NA	NA
UHGV-0107957_64	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0107957_64	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0107957_64	UniRef90	UniRef90_A0A7C6RR32	M23 family metallopeptidase	NA
UHGV-0107957_64	eggNOG-mapper	399741.Spro_2772	peptidase	NA
UHGV-0107957_64	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0107957_64	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA