UHGV-0108054

Genome information

Genome length 37,022 bps

CDS count 59

Completeness 91.23% (high-quality)

geNomad score 0.9289

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108054
vOTU ID	vOTU-065894
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_243656
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.23% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9289
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	98.13
Jumbo phage	No

Genome content
Genome length	37,022 bps
GC content	53.30%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	93.07%
Average CDS length	586.17 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108054_3	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0108054_3	PHROG	phrog_7	endolysin	lysis
UHGV-0108054_3	UniRef90	UniRef90_UPI000F610005	lysozyme	NA
UHGV-0108054_3	eggNOG-mapper	1122599.AUGR01000011_gene4029	Phage lysozyme	NA
UHGV-0108054_3	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0108054_3	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0108054_3	HAMAP	MF_04110	Endolysin	NA
UHGV-0108054_3	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0108054_6	Structural annotation	PF10989, NF011829	NA	NA
UHGV-0108054_7	PHROG	phrog_5668	tail fiber protein	tail
UHGV-0108054_7	eggNOG-mapper	407392.A0MN19_9CAUD	virus tail, fiber	NA
UHGV-0108054_7	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0108054_8	PHROG	phrog_9116	tail protein	tail
UHGV-0108054_8	UniRef90	UniRef90_UPI000F60BD24	phage tail protein	NA
UHGV-0108054_8	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0108054_8	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0108054_8	COG	COG4675	Phage tail collar domain	NA
UHGV-0108054_8	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0108054_9	PHROG	phrog_203	tail protein	tail
UHGV-0108054_9	UniRef90	UniRef90_UPI000F60B3C5	NA	NA
UHGV-0108054_9	eggNOG-mapper	1268068.PG5_42230	NA	NA
UHGV-0108054_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0108054_9	COG	COG3778	NA	NA
UHGV-0108054_9	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0108054_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0108054_10	UniRef90	UniRef90_UPI000F604B2E	baseplate J/gp47 family protein	NA
UHGV-0108054_10	eggNOG-mapper	882.DVU_2851	Baseplate J-like protein	NA
UHGV-0108054_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0108054_10	COG	COG3299	NA	NA
UHGV-0108054_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0108054_11	PHROG	phrog_180	tail protein	tail
UHGV-0108054_11	UniRef90	UniRef90_UPI000E511FD8	phage GP46 family protein	NA
UHGV-0108054_11	eggNOG-mapper	556268.OFAG_02347	Phage protein GP46	NA
UHGV-0108054_11	Pfam	PF07409	NA	GP46
UHGV-0108054_11	COG	COG4381	NA	NA
UHGV-0108054_11	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0108054_12	UniRef90	UniRef90_UPI001F42D505	phage baseplate assembly protein V	NA
UHGV-0108054_12	eggNOG-mapper	1524467.IV04_21440	Bacteriophage Mu Gp45 protein	NA
UHGV-0108054_12	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0108054_12	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0108054_12	COG	COG4384	NA	NA
UHGV-0108054_12	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0108054_13	PHROG	phrog_177	tail protein	tail
UHGV-0108054_13	UniRef90	UniRef90_R7I5A6	Phage tail protein putative	NA
UHGV-0108054_13	eggNOG-mapper	160488.PP_3863	tail protein	NA
UHGV-0108054_13	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0108054_13	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0108054_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0108054_15	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0108054_15	UniRef90	UniRef90_R7I967	DNA_circ_N domain-containing protein	NA
UHGV-0108054_15	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0108054_15	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0108054_15	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0108054_15	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0108054_16	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0108054_16	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-0108054_16	eggNOG-mapper	457396.CSBG_01057	tape measure	NA
UHGV-0108054_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0108054_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0108054_16	Structural annotation	TIGR01760	NA	NA
UHGV-0108054_17	PHROG	phrog_166	tail protein	tail
UHGV-0108054_17	UniRef90	UniRef90_A0A5F1H649	Phage tail assembly protein	NA
UHGV-0108054_17	eggNOG-mapper	1224136.AMFN01000003_gene3617	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0108054_17	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0108054_17	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0108054_18	PHROG	phrog_185	tail tube protein	tail
UHGV-0108054_18	UniRef90	UniRef90_A0A524BF51	Phage tail protein	NA
UHGV-0108054_18	eggNOG-mapper	742821.HMPREF9464_01826	Phage tail tube protein	NA
UHGV-0108054_18	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0108054_18	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0108054_19	PHROG	phrog_165	tail sheath	tail
UHGV-0108054_19	UniRef90	UniRef90_A0A3D3SFM4	Phage tail protein	NA
UHGV-0108054_19	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0108054_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0108054_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0108054_19	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0108054_19	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0108054_20	PHROG	phrog_209	portal protein	head and packaging
UHGV-0108054_20	UniRef90	UniRef90_Q8HAC7	Sb11	NA
UHGV-0108054_20	eggNOG-mapper	175950.Q8HAC7_9CAUD	NA	NA
UHGV-0108054_20	Structural annotation	PF09646	NA	NA
UHGV-0108054_21	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0108054_21	eggNOG-mapper	1407493.U5P416_9CAUD	NA	NA
UHGV-0108054_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0108054_21	Structural annotation	TIGR01725	NA	NA
UHGV-0108054_22	PHROG	phrog_25	head closure Hc1	connector
UHGV-0108054_22	UniRef90	UniRef90_A0A2S8IL59	Head-tail adaptor protein	NA
UHGV-0108054_22	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0108054_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0108054_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0108054_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0108054_23	UniRef90	UniRef90_A0A6L6YIV6	Phage gp6-like head-tail connector protein	NA
UHGV-0108054_23	eggNOG-mapper	557598.LHK_01771	Phage gp6-like head-tail connector protein	NA
UHGV-0108054_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0108054_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0108054_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0108054_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0108054_25	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0108054_25	eggNOG-mapper	1188794.I7HDH9_9CAUD	peptidase activity	NA
UHGV-0108054_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0108054_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0108054_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0108054_26	KOfam	K06904	NA	NA
UHGV-0108054_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0108054_26	UniRef90	UniRef90_A0A411WLS5	HK97 family phage prohead protease	NA
UHGV-0108054_26	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0108054_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0108054_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0108054_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0108054_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0108054_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0108054_27	UniRef90	UniRef90_A0A5B7ZK00	Phage portal protein	NA
UHGV-0108054_27	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0108054_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0108054_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0108054_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0108054_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0108054_28	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108054_28	UniRef90	UniRef90_UPI0006710F9A	terminase large subunit	NA
UHGV-0108054_28	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0108054_28	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0108054_28	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0108054_28	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108054_28	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0108054_29	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0108054_29	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-0108054_29	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0108054_29	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0108054_29	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0108054_31	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108054_31	UniRef90	UniRef90_UPI0013F6788F	NA	NA
UHGV-0108054_31	eggNOG-mapper	314345.SPV1_13679	NA	NA
UHGV-0108054_31	Pfam	PF13643	NA	DUF4145
UHGV-0108054_32	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0108054_32	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108054_32	UniRef90	UniRef90_R5PK02	Putative HNH endonuclease	NA
UHGV-0108054_32	eggNOG-mapper	1111454.HMPREF1250_0245	HNH nucleases	NA
UHGV-0108054_32	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0108054_32	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0108054_32	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0108054_34	Structural annotation	PF06530, NF006930, COG1595	NA	NA
UHGV-0108054_35	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0108054_35	UniRef90	UniRef90_UPI0012BD0F1C	NA	NA
UHGV-0108054_35	eggNOG-mapper	469610.HMPREF0189_01101	NA	NA
UHGV-0108054_35	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-0108054_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108054_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108054_36	UniRef90	UniRef90_A0A388SB36	Single-stranded DNA-binding protein	NA
UHGV-0108054_36	eggNOG-mapper	1203554.HMPREF1476_02173	Single-strand binding protein family	NA
UHGV-0108054_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108054_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108054_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108054_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0108054_36	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0108054_39	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0108054_39	PHROG	phrog_5482	NA	unknown function
UHGV-0108054_39	UniRef90	UniRef90_R7IKC5	SF4 helicase domain-containing protein	NA
UHGV-0108054_39	eggNOG-mapper	398578.Daci_1933	DnaB-like helicase C terminal domain	NA
UHGV-0108054_39	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0108054_39	COG	COG0305	Replicative DNA helicase	NA
UHGV-0108054_39	Structural annotation	PF03796, MF_04154, NF004109, COG0305	NA	NA
UHGV-0108054_41	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108054_41	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0108054_42	PHROG	phrog_8008	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108054_42	eggNOG-mapper	391038.Bphy_1910	NA	NA
UHGV-0108054_43	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0108054_43	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0108054_43	UniRef90	UniRef90_UPI001BFF7718	helix-turn-helix transcriptional regulator	NA
UHGV-0108054_43	eggNOG-mapper	264198.Reut_A2380	Peptidase S24-like	NA
UHGV-0108054_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108054_43	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0108054_43	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0108054_43	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0108054_46	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0108054_46	UniRef90	UniRef90_UPI001C62BAB2	ERF family protein	NA
UHGV-0108054_46	eggNOG-mapper	1123276.KB893279_gene2211	Erf family	NA
UHGV-0108054_46	Pfam	PF04404	ERF superfamily	ERF
UHGV-0108054_46	Structural annotation	PF04404, COG5055	NA	NA
UHGV-0108054_47	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0108054_47	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108054_47	UniRef90	UniRef90_A0A415CGP2	Exonuclease	NA
UHGV-0108054_47	eggNOG-mapper	382640.BT_0376	Exonuclease (EC 3.1.11.3) (P03697 of bacteriophage lambda)	NA
UHGV-0108054_47	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0108054_47	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0108054_47	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0108054_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108054_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108054_49	UniRef90	UniRef90_A0A388SB36	Single-stranded DNA-binding protein	NA
UHGV-0108054_49	eggNOG-mapper	1203554.HMPREF1476_02173	Single-strand binding protein family	NA
UHGV-0108054_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108054_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108054_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108054_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0108054_49	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0108054_52	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0108054_52	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0108054_52	UniRef90	UniRef90_UPI001F028CAB	dUTP diphosphatase	NA
UHGV-0108054_52	eggNOG-mapper	66692.ABC2847	deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0108054_52	Pfam	PF00692	dUTPase	dUTPase
UHGV-0108054_52	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0108054_52	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0108054_52	Structural annotation	PF00692, MF_00116, NF001862, COG0756	NA	NA
UHGV-0108054_54	PHROG	phrog_11324	nucleotide kinase	other
UHGV-0108054_54	UniRef90	UniRef90_A0A5E9B2R2	NA	NA
UHGV-0108054_54	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0108054_54	Pfam	PF11753	NA	DUF3310
UHGV-0108054_55	KOfam	K07733	alpA; prophage regulatory protein	NA
UHGV-0108054_55	UniRef90	UniRef90_R7IKS1	Transcriptional regulator AlpA family	NA
UHGV-0108054_55	eggNOG-mapper	762983.HMPREF9444_01504	DNA excision	NA
UHGV-0108054_55	Pfam	PF05930	Prophage CP4-57 regulatory protein (AlpA)	Phage_AlpA
UHGV-0108054_55	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0108054_55	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0108054_57	PHROG	phrog_245	anti-repressor Ant	transcription regulation
UHGV-0108054_57	UniRef90	UniRef90_A0A139K4R0	BRO family protein	NA
UHGV-0108054_57	eggNOG-mapper	1203554.HMPREF1476_00228	BRO family, N-terminal domain	NA
UHGV-0108054_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0108054_57	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0108054_57	COG	COG3617	Prophage antirepressor	NA
UHGV-0108054_57	Structural annotation	PF02498, TIGR02681, COG3617	NA	NA
UHGV-0108054_58	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0108054_58	UniRef90	UniRef90_UPI0007D0B756	KilA-N domain-containing protein	NA
UHGV-0108054_58	eggNOG-mapper	1305737.JAFX01000001_gene965	KilA-N	NA
UHGV-0108054_58	Pfam	PF04383	KilA-N domain	KilA-N
UHGV-0108054_58	Structural annotation	PF04383, NF033622, COG3943	NA	NA
UHGV-0108054_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0108054_59	UniRef90	UniRef90_A0A388S9N6	Bacteriophage P4 integrase	NA
UHGV-0108054_59	eggNOG-mapper	469610.HMPREF0189_01073	DNA integration	NA
UHGV-0108054_59	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0108054_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0108054_59	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA